| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,477,156 – 3,477,212 |
| Length | 56 |
| Max. P | 0.967040 |
| Location | 3,477,156 – 3,477,212 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 94.64 |
| Shannon entropy | 0.08692 |
| G+C content | 0.48214 |
| Mean single sequence MFE | -14.22 |
| Consensus MFE | -12.27 |
| Energy contribution | -12.15 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3477156 56 + 27905053 UGUUUCGGAGGCACCAACUGUUGUCUCCUCGUCCGCGAAAGACAAAUCCCCACUAA (((((.(((((((.(....).)))))))(((....))).)))))............ ( -14.10, z-score = -1.81, R) >droEre2.scaffold_4770 3736865 56 + 17746568 UAUUUCGGAGGCACCAACUGUUGUCUCCUCGUCCGCGAAAAACAAAUCCCCACUAA ......(((((((.(....).)))))))(((....))).................. ( -12.30, z-score = -2.44, R) >droYak2.chr3R_random 1085997 56 + 3277457 UGUUUUGGAGGCAACAACUGUUGUCUCCUCGUCCGCGAAAAACAAAUCCCUACUAA (((((((((((((((....)))))))))(((....)))))))))............ ( -19.40, z-score = -5.23, R) >droSec1.super_6 3568573 56 + 4358794 UGUUUCGGAGGCACCAACUGUUGUCUUCUCGUCCGCGAAAAACAAAUCCCCACUAA (((((.(((((((.(....).)))))))(((....))).)))))............ ( -11.10, z-score = -1.23, R) >consensus UGUUUCGGAGGCACCAACUGUUGUCUCCUCGUCCGCGAAAAACAAAUCCCCACUAA (((((.(((((((.(....).)))))))(((....))).)))))............ (-12.27 = -12.15 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:37 2011