| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,623,450 – 6,623,574 |
| Length | 124 |
| Max. P | 0.590780 |
| Location | 6,623,450 – 6,623,574 |
|---|---|
| Length | 124 |
| Sequences | 9 |
| Columns | 125 |
| Reading direction | reverse |
| Mean pairwise identity | 61.82 |
| Shannon entropy | 0.77594 |
| G+C content | 0.41846 |
| Mean single sequence MFE | -27.22 |
| Consensus MFE | -8.56 |
| Energy contribution | -7.77 |
| Covariance contribution | -0.78 |
| Combinations/Pair | 1.95 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6623450 124 - 23011544 UGUAUAUAAUC-CACACCUUUUAUAUUUCCUUGAUCCUUUAAGUAAGCAAUCAACUUGGGCCAAUCUUGAUGAGCCCGCCUUAAAAGUCCAAAGGAAUUUAGGGGAUUGGACACAUAUUUAUAUC .........((-((..(((((.....(((((((((..((((((.(((.......)))((((((.......)).))))..)))))).)))..))))))...)))))..)))).............. ( -24.50, z-score = -0.17, R) >droSim1.chr2L 6416843 121 - 22036055 ---AUGUAAUU-CACACCUUUCAUAUUUUCUUGAUCCCUUAAGUAAGCAAUCAACUUGGGCCAAUCUUGAUGAGCCCGCCUUACAAGUCCAAAGGAACUUCGGGGAUCAGACACAUAUUUAUAUC ---........-..................(((((((((.((((.............((((((.......)).)))).((((.........)))).)))).)))))))))............... ( -26.50, z-score = -1.43, R) >droSec1.super_3 2162725 121 - 7220098 ---AUGUAAUU-CACACCUUUCAUAUUUUCUUGAUCCCUUAAGUAAGCAAUCAACUUGGGCCAAUCUUGAUGAGCCCGCCUUACAAGUCCAAAGGAAAUUAGGGGAUUUGACACAUAUUUAUAUC ---........-................((..(((((((((((((((.........(((((((.......)).))))).)))))...(((...)))..)))))))))).)).............. ( -23.00, z-score = -0.25, R) >droYak2.chr2L 16033351 121 + 22324452 ---GCAUAAAU-CACACCUAUAAAAUUUCCUUGGUCUCUUAAGUACGAAGUCAACUUUGGCCAAUCUUGAUGAGCUCGCCUUAAAAGUCCAAAUGAAUUUAGGGGAUUGGACACAUAUUUAUAUU ---.....(((-(...((((...(((((..((((.((.(((((..(((((....)))))((...((.....))....))))))).)).))))..))))))))).))))................. ( -22.20, z-score = -0.29, R) >droEre2.scaffold_4929 15532477 121 - 26641161 ---AUAUAGUU-CACACCCAUUACAUUUCCUUGAUCUCUUAAGUAAGAUAUCAACUUGGGCCAAUCUUGAUGAGCUCGUCUUACAAGUCCCAAACAAUUUAGGGGAUUGGACACAUAUUUAUAUC ---.....(((-((..(((...........(((((.((((....)))).))))).(((((.....((((.((((.....)))))))).)))))........)))...)))))............. ( -25.70, z-score = -1.48, R) >droAna3.scaffold_12916 7560128 116 + 16180835 ----UGUUUUUAAAUACCUUUGAAACUAUCAUUACUCCUAAUAUAAGCAUUAAUUUUGGGCCAGUCUUCGUGAGAUCGCCUCACAAGACCAAAUAUGUUUAGAGGAUUUUUCACAUAUUU----- ----(((....((((.((((((((............(((((.((........)).)))))...(((((.(((((.....))))))))))........))))))))))))...))).....----- ( -22.80, z-score = -2.03, R) >dp4.chr4_group5 1895958 98 + 2436548 ---------------------------UUCCUGAUCUUUGAUGUAGGACAACCACUUGGGCCAGUCUUCAUGGGCACGCCGAAGCAGUCCUAGCGCGUUCAGAGGAUUGGCCACGUACUGAACGC ---------------------------.((((((((...))).)))))..........(((((((((((.(((((.(((.((.....))...))).)))))))))))))))).(((.....))). ( -33.50, z-score = -1.37, R) >droPer1.super_5 1768790 98 + 6813705 ---------------------------UUCCUGAUCUUUGAUGUAGGACAACCACUUGGGCCAGUCUUCAUGGGCACGCCGAAGCAGUCCUAGCGCGUUCAGAGGAUUGGCCACGUACUGAACGC ---------------------------.((((((((...))).)))))..........(((((((((((.(((((.(((.((.....))...))).)))))))))))))))).(((.....))). ( -33.50, z-score = -1.37, R) >droMoj3.scaffold_6680 16295989 93 - 24764193 --------------------------------CCUGCUUUGUGUACUUCUGAAGUGUGGGCCAGUCCUGGCGUAACCGUCGAAUGAGUGAAAACUCAUGCAGAGGAUUGGCGAGGUACUGUUUUU --------------------------------..........(((((((..........(((((((((((((....))))(.((((((....)))))).)..))))))))))))))))....... ( -33.30, z-score = -2.85, R) >consensus ____U_UAAUU_CACACCUUU_A_AUUUUCUUGAUCCCUUAAGUAAGAAAUCAACUUGGGCCAAUCUUGAUGAGCCCGCCUUACAAGUCCAAACGAAUUUAGGGGAUUGGACACAUAUUUAUAUC ..............................(..((((((.((((.........((((((((...((.....))....)))...)))))........)))).))))))..)............... ( -8.56 = -7.77 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:40 2011