| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,473,693 – 3,473,794 |
| Length | 101 |
| Max. P | 0.865039 |
| Location | 3,473,693 – 3,473,794 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 65.04 |
| Shannon entropy | 0.63424 |
| G+C content | 0.37999 |
| Mean single sequence MFE | -17.83 |
| Consensus MFE | -9.17 |
| Energy contribution | -9.62 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3473693 101 + 27905053 AAAAAAAAUACAAAAAUUUCAGCGA--UACAUAGAAACAACAUGCGGU-GAAACACUGCUUUGGCGUAUGUUCUCGCA-AACCUAAGAAA-AAAGUACAUAUACUC-------- .....................((((--.((((((...(((...(((((-(...)))))).))).).)))))..)))).-...........-...............-------- ( -17.20, z-score = -1.71, R) >droSec1.super_6 3565223 99 + 4358794 ---------AAAAAAAAAACAGCGA--UACAUAGAAACAACAUGCGGU-GAAACACUGCUUUGGCGUAUGUUCUCGCA-AACCUAAGAAA-AAAGUACAUAUAAGUAACACAC- ---------............((((--.((((((...(((...(((((-(...)))))).))).).)))))..)))).-...........-....(((......)))......- ( -17.30, z-score = -1.57, R) >droSim1.chr3R 3525959 99 + 27517382 ---------AAAAAAAAAACAGCGA--UACAUAGAAACAACAUGCGGU-GAAACACUGCUUUGGCGUAUGUUCUCGCA-AACCUAAGAAA-AAAGUACAUAUAAGUAACACAC- ---------............((((--.((((((...(((...(((((-(...)))))).))).).)))))..)))).-...........-....(((......)))......- ( -17.30, z-score = -1.57, R) >droYak2.chr3R_random 1079604 99 + 3277457 ---------ACAAAAAAAUCAGCGA--UACUUAGAAACAACGUGCAGU-GAAACACUGCUUUGGCGUAUGUUUUCGCA-AACCUAAGAAA-AAAGCAUAAAAAAGUAACACAC- ---------............((..--..(((((...(((...(((((-(...)))))).)))(((........))).-...)))))...-...)).................- ( -17.80, z-score = -1.18, R) >droAna3.scaffold_13340 3239850 113 + 23697760 CAGUCUACAAAUAAAAUUUUGGGGAGCUACACAGAAACAACAUGCGGU-GAAACACAGCUUUGGCGUAUGUUUUCGCAUAAGCUAAGGAAUAAAAAGUAAAAAAGAAAUAUACG ...((..((((......))))..))(((.....((((..(((((((.(-(((.......)))).))))))))))).....)))............................... ( -18.10, z-score = -0.41, R) >droMoj3.scaffold_6540 6746692 87 + 34148556 ------AUAAAGAAUAAAUUGCUGG---CAAUGGGAGCAGAAACCAGUCAAAACAGUGGCUGGAGGUGUGGUGG-GCUGAGUCGAAGGCG---GGUGCGG-------------- ------..............(((.(---(..(.((..(((...(((((((......)))))))...........-.)))..)).)..)).---)))....-------------- ( -19.26, z-score = 0.13, R) >consensus _________AAAAAAAAAUCAGCGA__UACAUAGAAACAACAUGCGGU_GAAACACUGCUUUGGCGUAUGUUCUCGCA_AACCUAAGAAA_AAAGUACAUAUAAGUAACACAC_ .....................((((...(((((....(((...(((((......))))).)))...)))))..))))..................................... ( -9.17 = -9.62 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:35 2011