| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,442,122 – 3,442,172 |
| Length | 50 |
| Max. P | 0.974095 |
| Location | 3,442,122 – 3,442,172 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 96.00 |
| Shannon entropy | 0.06490 |
| G+C content | 0.44500 |
| Mean single sequence MFE | -13.92 |
| Consensus MFE | -11.85 |
| Energy contribution | -12.10 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.974095 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3442122 50 - 27905053 GCGUUUGUCGAGCUCUGAAAAGAGUCGAUCGAUAAACCAUUCCUUGUCAA (.((((((((((((((....)))))...))))))))))............ ( -17.00, z-score = -3.92, R) >droEre2.scaffold_4770 3703578 50 - 17746568 GCGUUUGUCGAGCUCUGAAUACAGUCGAUCGAUAAACCAAUCCCUGUCAA (.(((((((((...(((....)))....))))))))))............ ( -12.90, z-score = -2.83, R) >droSec1.super_6 3533899 50 - 4358794 GCGUUUGUCGAGCUCUGAAAACAGUCGAUCGAUAAACCAUUCCUUGUCAA (.(((((((((...(((....)))....))))))))))............ ( -12.90, z-score = -2.46, R) >droSim1.chr3R 3494218 50 - 27517382 GCGUUUGUCGAGCUCUGAAAACAGUCGAUCGAUAAACCAUUCCUUGUCAA (.(((((((((...(((....)))....))))))))))............ ( -12.90, z-score = -2.46, R) >consensus GCGUUUGUCGAGCUCUGAAAACAGUCGAUCGAUAAACCAUUCCUUGUCAA (.(((((((((...(((....)))....))))))))))............ (-11.85 = -12.10 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:34 2011