| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,424,905 – 3,425,049 |
| Length | 144 |
| Max. P | 0.612722 |
| Location | 3,424,905 – 3,425,049 |
|---|---|
| Length | 144 |
| Sequences | 5 |
| Columns | 144 |
| Reading direction | forward |
| Mean pairwise identity | 88.38 |
| Shannon entropy | 0.20148 |
| G+C content | 0.51602 |
| Mean single sequence MFE | -46.36 |
| Consensus MFE | -35.51 |
| Energy contribution | -35.67 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3424905 144 + 27905053 GCAACCGCUGAACUUUCGCAGAUAAGAACGGGUGGUGGCACGCAAUACAGGUGGUGCAGGUGGGUUAUAUAUAUAUGUGUAUGUUGACUGCUGGAGGGGAGUGGUUGAGUGGCGCUAAUAAAGCGGGUGCCGCAAUUAAGGUCA .((((((((...(((((((((........(.(((....))).)..........(((((.(((.((.....)).))).))))).....)))).)))))..)))))))).((((((((.........))))))))........... ( -44.40, z-score = -0.64, R) >droSim1.chr3R 3475303 135 + 27517382 GCAACCGCUGAACUUUCGCAGAUAAGAACGGGUGGUGGCACGCAAUACAGGUGG---------GUUAUAUAUCUAUGUGUAUGUAGUCUGCUGGAGGGGAGUGGUUGAGUGGCGCUAAUAAAAUGGGUGCCGCAAUUAAGGUCA .((((((((...(((((((((((......(.(((....))).).(((((.((((---------((.....)))))).)))))...)))))).)))))..)))))))).((((((((.........))))))))........... ( -52.00, z-score = -4.24, R) >droSec1.super_6 3516457 135 + 4358794 GCAACCGCUGAACUUUCGCAGAUAAGAACGGGUGGUGGCACGCAAUACAGGCGG---------GUUAUAUAUCUAUGUGUAUGUAGUCUGCUGGAGGGGAGUGGUUGAGUGGCGCUAAUAAAGCGGGUGCCGCAAUUAAGGUCA .((((((((...(((((((((((......(.(((....))).).(((((.(..(---------((.....)))..).)))))...)))))).)))))..)))))))).((((((((.........))))))))........... ( -48.40, z-score = -2.37, R) >droYak2.chr3R 21928300 140 - 28832112 GCAACCGCUGAACUUUCGCAGAUAAGAACGGGUGGUGGCAUGGAAUACGGGUGGUGCAG----GUGGGUUAUACUCGUACAUGUGGACUGCUGGAGGGGAGUGGUUGAGUGGCGCUAAUAAAGCGGGUGCCGCAAUUAAGGUCA .((((((((...(((((((((......((.....)).(((((...((((((((..((..----....))..)))))))))))))...)))).)))))..)))))))).((((((((.........))))))))........... ( -47.40, z-score = -1.66, R) >droEre2.scaffold_4770 3684731 132 + 17746568 GCAACCGCUGAACUUUCGCAGAUAAGAACGGGUGGUGGCACGCAAUACAGGUGGUGCAG----GUGGGUUAUA--------UGUAGACUGCUGGAUGGGAGUGGUUGAGUGGCGCUAAUAAAGCGGGUGCCGCAAUUAAGGUCA .((((((((...(.(((((((........(.(((....))).)..((((.((..(.(..----..).)..)).--------))))..)))).))).)..)))))))).((((((((.........))))))))........... ( -39.60, z-score = 0.10, R) >consensus GCAACCGCUGAACUUUCGCAGAUAAGAACGGGUGGUGGCACGCAAUACAGGUGGUGCAG____GUUAUAUAUAUAUGUGUAUGUAGACUGCUGGAGGGGAGUGGUUGAGUGGCGCUAAUAAAGCGGGUGCCGCAAUUAAGGUCA .((((((((...(((((((((........(.(((....))).)..((((................................))))..)))).)))))..)))))))).((((((((.........))))))))........... (-35.51 = -35.67 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:31 2011