| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,389,809 – 3,389,863 |
| Length | 54 |
| Max. P | 0.515928 |
| Location | 3,389,809 – 3,389,863 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 94.26 |
| Shannon entropy | 0.10560 |
| G+C content | 0.47582 |
| Mean single sequence MFE | -16.92 |
| Consensus MFE | -15.28 |
| Energy contribution | -16.12 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3389809 54 + 27905053 UGCAACUUUGAAUGCGGAUUGCAUCUGCAUGGUGUUGCUCAUACGCCAUGUGGU (((((.((((....))))))))).(..((((((((.......))))))))..). ( -19.50, z-score = -2.00, R) >droSim1.chr3R 3438064 54 + 27517382 UGCAACUUUGAAUGCGGAUUGCAUCAGCAUGGUGUUGCUCAUACGCCAUGUGGU (((((.((((....)))))))))...(((((((((.......)))))))))... ( -17.40, z-score = -0.92, R) >droSec1.super_6 3481359 54 + 4358794 UGCAACUUUGAAUGCGGAUUGCAUCUGCAUGGUGUUGCUCAUACGCCAUGUGGU (((((.((((....))))))))).(..((((((((.......))))))))..). ( -19.50, z-score = -2.00, R) >droEre2.scaffold_4770 3649634 51 + 17746568 UGCAACUUUGAAUGCGGAUUGCAUCUGCAU---GUUGCUCAUACGCCGUGUGGU .(((((.....((((((((...))))))))---)))))((((((...)))))). ( -15.40, z-score = -0.89, R) >droAna3.scaffold_13340 3163051 54 + 23697760 UGCAACUUUGAAUCCGGAUUGCAUCUGCAUGAUGUUACUCAUACGCCAUGUGGU (((((.((((....))))))))).(..((((.(((.......))).))))..). ( -12.80, z-score = -0.68, R) >consensus UGCAACUUUGAAUGCGGAUUGCAUCUGCAUGGUGUUGCUCAUACGCCAUGUGGU (((((.((((....))))))))).(((((((((((.......))))))))))). (-15.28 = -16.12 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:26 2011