| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,616,585 – 6,616,676 |
| Length | 91 |
| Max. P | 0.731199 |
| Location | 6,616,585 – 6,616,676 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 92.62 |
| Shannon entropy | 0.13679 |
| G+C content | 0.34447 |
| Mean single sequence MFE | -22.48 |
| Consensus MFE | -16.95 |
| Energy contribution | -17.48 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6616585 91 - 23011544 AUAAAUUAGUGAGUUAAGAAU---UAGAUCUAGCUAUGAGC--GUGUCGAGGUAGGCUUAACAGUUUGUUAGUUGGAU-UGGCUUACAAAUUAAGAG ...((((.(((((((......---..((((((((((..(((--.(((..((.....))..))))))..).))))))))-)))))))).))))..... ( -23.40, z-score = -2.61, R) >droSim1.chr2L 6409707 91 - 22036055 AUAAAUUAGUGAGUUAAGAAU---UAGAUCUAGCUAUGAGC--GUGUCGAGGUAGGCUUAACAGUUUGUUAGUUGGAU-UGGCUUACAAAUUAAGAG ...((((.(((((((......---..((((((((((..(((--.(((..((.....))..))))))..).))))))))-)))))))).))))..... ( -23.40, z-score = -2.61, R) >droSec1.super_3 2155821 91 - 7220098 AUAAAUUAGUGAGUUAAGAAU---UAGAUCUAGCUAUGAGC--GUGUCGAGGUAGGCUUAACAGUUUGUUAGUUGGAU-UGGCUUACAAAUUAAGAG ...((((.(((((((......---..((((((((((..(((--.(((..((.....))..))))))..).))))))))-)))))))).))))..... ( -23.40, z-score = -2.61, R) >droYak2.chr2L 16026216 91 + 22324452 AUAAAUUAGUAAGUUAAGAAU---UAGAUCUAGCUAUGAGC--GUGUCGAGGUAGGCUUAACAGUUUGUUAGUUGGAU-UGGCUUACAAAUUAAGAG ...((((.(((((((......---..((((((((((..(((--.(((..((.....))..))))))..).))))))))-)))))))).))))..... ( -23.30, z-score = -2.70, R) >droEre2.scaffold_4929 15525430 91 - 26641161 AUAAAUUAGUGAGUUAAGAAU---UAGAUCUAGCUAUGAGC--GUGUCGAGGUAGGCUUAACAGUUUGUUAGUUGGAU-UGGCUUACAAAUUAAGAG ...((((.(((((((......---..((((((((((..(((--.(((..((.....))..))))))..).))))))))-)))))))).))))..... ( -23.40, z-score = -2.61, R) >droWil1.scaffold_180772 331349 97 - 8906247 AUAAAUUAAAAUGAUAAAUGUUAGUAGAUCUAACUAUGAGCGUGUGUCGAGGUAGGCUUAACAAUCUGUUAGUUGCUUGUGGCUUAUAAAUUAAGAG ...........(((((.(((((.((((......)))).))))).)))))..(((((((..((((.(........).))))))))))).......... ( -18.00, z-score = -0.42, R) >consensus AUAAAUUAGUGAGUUAAGAAU___UAGAUCUAGCUAUGAGC__GUGUCGAGGUAGGCUUAACAGUUUGUUAGUUGGAU_UGGCUUACAAAUUAAGAG ...((((.((((((((...........((((((((((((((...(((..((.....))..)))))))).))))))))).)))))))).))))..... (-16.95 = -17.48 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:39 2011