| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,383,815 – 3,383,881 |
| Length | 66 |
| Max. P | 0.837380 |
| Location | 3,383,815 – 3,383,881 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 72.68 |
| Shannon entropy | 0.51986 |
| G+C content | 0.51789 |
| Mean single sequence MFE | -20.76 |
| Consensus MFE | -8.71 |
| Energy contribution | -8.63 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3383815 66 - 27905053 UCUGGUAUCCAUUAUUGCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAAUCGC-CAGCAUCUCCCA------- ...((........((((((((....)))))))).....((((((........))-)))).....)).------- ( -21.40, z-score = -2.99, R) >droSim1.chr3R 3436748 67 - 27517382 UCUGGUAUCCAUUAUUGCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAUUCGGCCAGCACCUCCCA------- ...(((.......((((((((....)))))))).....(((((((.......)))))))))).....------- ( -23.20, z-score = -2.77, R) >droSec1.super_6 3480052 67 - 4358794 UCUGGUAUCCAUUAUUUCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAUUCGGCCAGCACCUCCCA------- ...(((.......(((.((((....)))).))).....(((((((.......)))))))))).....------- ( -16.60, z-score = -1.01, R) >droYak2.chr3R_random 1041121 66 - 3277457 UCUGGUAUCCAUUAUUGCGGUUAUAGCGGCAGUUCCCAGUUGGCUCAUAAUCGG-GAGCACCUCUCA------- ...(((.........(((.((....)).)))((((((.((((.....)))).))-))))))).....------- ( -19.00, z-score = -1.38, R) >droEre2.scaffold_4770 3648576 66 - 17746568 UCUGGUAUCCAUUAUUGCGGUCAUAGCCGCAGCUCCCAGUUGGCUCAUAAUCGG-GAGCACCUCCCA------- ...(((.........((((((....))))))((((((.((((.....)))).))-))))))).....------- ( -25.30, z-score = -3.48, R) >droAna3.scaffold_13340 3161734 74 - 23697760 UCGGAUAUUCAUUAUUGCGGUUAUGGCCGCAGUUCCCAAUUGGGUCAUAAUCGGGGAAACGGAAUCAUAACGCA ...(((.(((.......(((((((((((.((((.....))))))))))))))).(....)))))))........ ( -21.80, z-score = -1.81, R) >droVir3.scaffold_13049 16807207 55 + 25233164 -----------UUGUGGUGCCUGUGGUGGCAAUUUUCAGUUGGCCAACCGGCGCCUAA-AUGUGCCA------- -----------....((((((...(((((((((.....))).))).)))))))))...-........------- ( -18.00, z-score = -0.26, R) >consensus UCUGGUAUCCAUUAUUGCGGUUAUGGCCGCAGUUCCCAGUUGGCUCAUAAUCGG_CAGCACCUCCCA_______ .................(((((((((((((........).))))).)))))))..................... ( -8.71 = -8.63 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:25 2011