| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,356,816 – 3,356,874 |
| Length | 58 |
| Max. P | 0.993606 |
| Location | 3,356,816 – 3,356,874 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 94.14 |
| Shannon entropy | 0.10001 |
| G+C content | 0.53793 |
| Mean single sequence MFE | -16.34 |
| Consensus MFE | -15.42 |
| Energy contribution | -15.62 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.63 |
| SVM RNA-class probability | 0.993606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3356816 58 + 27905053 GUCUGUUCGAAAUCCAUUCCCGGGCAUUCCAACGUAUACGCCCGCAGAGUCAGACCCC (((((((((((.....))).(((((..............)))))..))).)))))... ( -15.44, z-score = -2.79, R) >droSim1.chr3R 3408611 58 + 27517382 GUCUGUUCGAAAUCUAUUCUCGGGCAUUCCAACGUAAACGCCCGCAGAGUCAGACCCC (((((..........((((((((((..............))))).))))))))))... ( -16.34, z-score = -2.89, R) >droSec1.super_6 3452452 58 + 4358794 GUCUGUUCGAAAUCUAUUCUCGGGCAUUCCAACGUAUACGCCCGCAGAGUCAGACCCC (((((..........((((((((((..............))))).))))))))))... ( -16.34, z-score = -2.83, R) >droYak2.chr3R 21872472 58 - 28832112 GUCUGUUGAAAAUCCAUUCUCGGGCAUUCCAACGUAUACGCCCGCAGAGUCAGACCCC (((((..........((((((((((..............))))).))))))))))... ( -16.34, z-score = -2.95, R) >droEre2.scaffold_4770 3617413 58 + 17746568 GUCUGUUGAAAAUCCAUUCUCGGGCAUUCCAACGUAUACGCCCGCAGAGUCAGACAGC (((((..........((((((((((..............))))).))))))))))... ( -17.24, z-score = -2.87, R) >consensus GUCUGUUCGAAAUCCAUUCUCGGGCAUUCCAACGUAUACGCCCGCAGAGUCAGACCCC (((((..........((((((((((..............))))).))))))))))... (-15.42 = -15.62 + 0.20)
| Location | 3,356,816 – 3,356,874 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 94.14 |
| Shannon entropy | 0.10001 |
| G+C content | 0.53793 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -18.08 |
| Energy contribution | -17.44 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.966331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3356816 58 - 27905053 GGGGUCUGACUCUGCGGGCGUAUACGUUGGAAUGCCCGGGAAUGGAUUUCGAACAGAC (..((((...(((.(((((((..........))))))))))..))))..)........ ( -18.80, z-score = -1.60, R) >droSim1.chr3R 3408611 58 - 27517382 GGGGUCUGACUCUGCGGGCGUUUACGUUGGAAUGCCCGAGAAUAGAUUUCGAACAGAC (..(((((..(((.(((((((((......)))))))))))).)))))..)........ ( -24.10, z-score = -3.87, R) >droSec1.super_6 3452452 58 - 4358794 GGGGUCUGACUCUGCGGGCGUAUACGUUGGAAUGCCCGAGAAUAGAUUUCGAACAGAC (..(((((..(((.(((((((..........)))))))))).)))))..)........ ( -20.70, z-score = -2.74, R) >droYak2.chr3R 21872472 58 + 28832112 GGGGUCUGACUCUGCGGGCGUAUACGUUGGAAUGCCCGAGAAUGGAUUUUCAACAGAC ...(((((..(((.(((((((..........)))))))))).(((....))).))))) ( -17.40, z-score = -1.40, R) >droEre2.scaffold_4770 3617413 58 - 17746568 GCUGUCUGACUCUGCGGGCGUAUACGUUGGAAUGCCCGAGAAUGGAUUUUCAACAGAC ...(((((..(((.(((((((..........)))))))))).(((....))).))))) ( -17.40, z-score = -1.76, R) >consensus GGGGUCUGACUCUGCGGGCGUAUACGUUGGAAUGCCCGAGAAUGGAUUUCGAACAGAC (..(((((..(((.(((((((..........)))))))))).)))))..)........ (-18.08 = -17.44 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:22 2011