| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,343,482 – 3,343,533 |
| Length | 51 |
| Max. P | 0.582051 |
| Location | 3,343,482 – 3,343,533 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 57.89 |
| Shannon entropy | 0.55789 |
| G+C content | 0.35318 |
| Mean single sequence MFE | -6.70 |
| Consensus MFE | -5.20 |
| Energy contribution | -4.77 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.17 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3343482 51 - 27905053 CCUGGUAGUUU-AUCGGGAAAACAGCUUUGAAU--------ACACCUUUUACUUUAGAAC (((((((...)-))))))...............--------................... ( -5.90, z-score = 0.52, R) >droPer1.super_93 163280 52 - 177177 AUCGACAAUUUGGUCGAAAAGAUAUCACUAUAU--------ACAGAUUUUACUUUUGAGC .(((((......)))))................--------.((((.......))))... ( -6.80, z-score = -0.86, R) >droSim1.chr3R 3395232 58 - 27517382 CCUGGUAAACC--UCGGGAAAACUGCUUUAAAUAGCUAAACACGCUUUUAACUUUAGAAC (((((......--)))))....(((..(((((.(((.......))))))))...)))... ( -7.40, z-score = -0.17, R) >consensus CCUGGUAAUUU__UCGGGAAAACAGCUUUAAAU________ACACAUUUUACUUUAGAAC ((((((......)))))).......................................... ( -5.20 = -4.77 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:20 2011