| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,338,833 – 3,338,891 |
| Length | 58 |
| Max. P | 0.594672 |
| Location | 3,338,833 – 3,338,891 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 75.64 |
| Shannon entropy | 0.38551 |
| G+C content | 0.34476 |
| Mean single sequence MFE | -8.75 |
| Consensus MFE | -4.82 |
| Energy contribution | -6.22 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594672 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3338833 58 - 27905053 UUGGAAUUAGCACUUGAUCUCUAAUAGAUCGCACUGAUUGCAUCUGAACAAAAAAAAA .((.((((((....((((((.....))))))..)))))).))................ ( -9.90, z-score = -1.82, R) >droSim1.chr3R 3390930 53 - 27517382 UUGUAAUUAGCACUUGAUCUCUAACAGAUCGCACUGAUUGCAUCUGAAAAAAA----- .(((((((((....((((((.....))))))..)))))))))...........----- ( -12.50, z-score = -3.08, R) >droSec1.super_6 3435206 53 - 4358794 UUGUAAUUAGCACUUGAUCUCUAACAGAUCGCACUGAUUGCAUCUGAAAAAAA----- .(((((((((....((((((.....))))))..)))))))))...........----- ( -12.50, z-score = -3.08, R) >dp4.chr2 26733969 53 - 30794189 UUACAAUUAGCACUGGAUAUCUAAUAAUUCACACCAAUUGCAGUUCGUACACG----- .(((((((.(((.(((.................)))..))))))).)))....----- ( -4.43, z-score = -0.37, R) >droPer1.super_6 2051910 53 - 6141320 UUACAAUUAGCACUGGAUAUCUAAUAAUUCACACCAAUUGCAGUUCGUACACG----- .(((((((.(((.(((.................)))..))))))).)))....----- ( -4.43, z-score = -0.37, R) >consensus UUGCAAUUAGCACUUGAUCUCUAAUAGAUCGCACUGAUUGCAUCUGAAAAAAA_____ .(((((((((.....(((((.....)))))...)))))))))................ ( -4.82 = -6.22 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:19 2011