| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,293,747 – 3,293,847 |
| Length | 100 |
| Max. P | 0.779425 |
| Location | 3,293,747 – 3,293,847 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 69.83 |
| Shannon entropy | 0.52780 |
| G+C content | 0.38859 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -8.81 |
| Energy contribution | -10.59 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.779425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3293747 100 + 27905053 UUAAUCCGCAAGAA---GAAUGAGCAGCUUAAUAUG-G-AAAAAAGACCAGAAAUCAGGCCUUUAUUGUGUGUGGGUGUGUGUGUGCUCCAUUGAGUUGUUCACA- ......(....)..---...(((((((((((..(((-(-(....(.((((.(..(((.(((......).)).))).).)).)).)..))))))))))))))))..- ( -24.30, z-score = -0.86, R) >droSim1.chr3R 3338109 87 + 27517382 UUAAUUCGCAGGAA---GAAUGAGCAGCUUAAUAAG-GGAAAAAAGAGCAGAAAUCAGGCAUUUAUUGUGUG--------------CUCCAUUGAGUUGUUCACA- ...((((.......---))))((((((((((((...-(((.....((.......))..((((.......)))--------------))))))))))))))))...- ( -20.30, z-score = -1.27, R) >droSec1.super_6 3384506 87 + 4358794 UUAAUUCGCAGGAA---GAAUGAGCAGCUUAAUAAG-GGAAAAAAGAGCAGAAAUCAGGCAUUUAUUGUGUG--------------CUCCAUUGAGUUGUUCACA- ...((((.......---))))((((((((((((...-(((.....((.......))..((((.......)))--------------))))))))))))))))...- ( -20.30, z-score = -1.27, R) >droYak2.chr3R 21779517 92 - 28832112 UUAAUCCGCAAGAA---GAAUGAACAGCUUAAUACGAGGAAAAAAAAACAAAAAUCAGGCAUUUGUUGUGUGUG----------UCCUCCAUUGAGUUGUUCACA- ......(....)..---...(((((((((((((..(((((......((((((.........)))))).......----------))))).)))))))))))))..- ( -26.12, z-score = -3.78, R) >droEre2.scaffold_4770 3559137 90 + 17746568 UUAAUCCGCAAGAA---GGAUGAACAGCUUAAUGAG--GGAAAAAGGCCAGGAAUCAGGCAUUUAUUGUGUGCG----------UCCUCAAUCGAUUUGUUCACA- ...((((.......---))))((((((.(..(((((--((......(((........))).......(....).----------))))).))..).))))))...- ( -19.50, z-score = -0.04, R) >droWil1.scaffold_181089 7178892 89 + 12369635 CAGAUGCACAGUCCUUUGAAUUUUCCGCAUAGAUUGCGAGAAAAACGAAAGGACUGAAUGAAUGAAUGU-----------------UUCUGAUGCAUUUGUGACAA (((((((((((((((((...(((((((((.....)))).)))))...)))))))))...(((.......-----------------)))...))))))))...... ( -30.90, z-score = -5.33, R) >consensus UUAAUCCGCAAGAA___GAAUGAGCAGCUUAAUAAG_GGAAAAAAGAACAGAAAUCAGGCAUUUAUUGUGUG______________CUCCAUUGAGUUGUUCACA_ ....................(((((((((((((....(((...............((.(((.....))).))...............))))))))))))))))... ( -8.81 = -10.59 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:16 2011