| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,272,213 – 3,272,304 |
| Length | 91 |
| Max. P | 0.868404 |
| Location | 3,272,213 – 3,272,304 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 75.98 |
| Shannon entropy | 0.44780 |
| G+C content | 0.45554 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -12.97 |
| Energy contribution | -12.64 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3272213 91 + 27905053 CACGCCGGCCACACGUUUUGGCAAUUUCCGGG-UAACAAAACCGGAAAAAUACUUCGAAACGCAAUAAAUUUCCAAAGAAGCUGGGGCCGAG------------------------- .....(((((...((((((((...(((((((.-........)))))))......))))))))..........(((.......))))))))..------------------------- ( -27.70, z-score = -2.47, R) >droSim1.chr3R 3316657 91 + 27517382 CACGCCGGCCACACGUUUUGGCAAUUUCCGGG-UAACAAAACCGGAAAAAUACUUCAAAACGCAAUACAUUUCCAAAGAAGCUGGGGCCGAG------------------------- .....(((((...((((((((...(((((((.-........)))))))......))))))))..........(((.......))))))))..------------------------- ( -28.00, z-score = -3.00, R) >droSec1.super_6 3363324 81 + 4358794 CACGCCGGCCACACGUUUUGGCAAUUUCCGGG-UAACAAAACCGGAAAAAUACUUCAAAACGCAAUAAAUUUCCAAAGAAGC----------------------------------- ...((..((((.......))))..(((((((.-........))))))).............))...................----------------------------------- ( -16.50, z-score = -1.22, R) >droYak2.chr3R_random 966960 91 + 3277457 CACGCCGGCCACACGUUUUGGCAAUUUCCGGG-UAACAAAACCGGAAAAAUACUUCAAAACGUAAUAAAUUUCCAAAGAAGCUGGGGCCGAG------------------------- .....(((((..(((((((((...(((((((.-........)))))))......))))))))).........(((.......))))))))..------------------------- ( -29.80, z-score = -3.56, R) >droEre2.scaffold_4770 3537617 91 + 17746568 CACGCCGGCCACACGUUUUGGCAAUUUCCGGG-UAACAAAACCGGAAAAAUACUUCAAAACGCAAUAAAUUUCCAAAGAAGCUGGAGCUGAG------------------------- .....((((....((((((((...(((((((.-........)))))))......)))))))).........((((.......))))))))..------------------------- ( -23.30, z-score = -1.97, R) >droAna3.scaffold_13340 3055240 115 + 23697760 CACGCUGGCCACACGUUUCGGCAAUUUCCGGG-CAACAAAACCGGAAAAAUACUUUAAAAUGUAAUAAAUUUGGGAAGAACCUGGAGCAGGGGCGAUGG-UGAUUUCGAUGGCGGAG ..((((.((((..(((..(.((..(((((((.-........)))))))..(((........))).....((..((.....))..)))).)..))).)))-)(....)...))))... ( -32.10, z-score = -1.43, R) >dp4.chr2 26675379 110 + 30794189 CACGCCGGCCACACGUUUCGGCAAUUUCCGGGGCAACAAAACCGGAAAAAUACUUGAAAAUGUAAUAAAUUUCGAAAGACGUGGAGGUUGGGACCUGGGACGAAGCUGAU------- ....((((((.((((((((((...(((((((..........)))))))..(((........))).......))))..))))))..))))))...................------- ( -30.20, z-score = -0.98, R) >droPer1.super_6 1993202 110 + 6141320 CACGCCGGCCACACGUUUCGGCAAUUUCCGGGGCAACAAAACCGGAAAAAUACUUGAAAAUGUAAUAAAUUUGGAGAGACGCGGAGGUUGGGACCUGGGACGAAGCUGAU------- ....((((((.(.((((((..((((((((((..........)))))))..(((........)))......)))..)))))).)..))))))...................------- ( -29.90, z-score = -0.83, R) >droWil1.scaffold_181089 7151811 82 + 12369635 CACGCCGGCCACACGUUUCGGCAAUUUCCGGG-CAACAAAACCGGAAAAAUACUUGAAAAUGUAAUAAAUUUUC-AAGGCGUUG--------------------------------- .(((((.(((.........)))..(((((((.-........))))))).....((((((((.......))))))-)))))))..--------------------------------- ( -26.50, z-score = -3.71, R) >droVir3.scaffold_12855 6155750 90 + 10161210 CGUACCGUCCACACGUUUCGGCAAUUUCCGGA-CAACAGAACCGGAAAAAUACUCGAAAAUGUAAUAAAUUUUC-AAGGCGUUGAAUCUAAG------------------------- ..............(.((((((..(((((((.-........)))))))....((.((((((.......))))))-.))..)))))).)....------------------------- ( -18.60, z-score = -1.15, R) >droMoj3.scaffold_6540 6490453 85 + 34148556 CGCACCGGCCACACGUUUCGGCAAUUUCCGGA-CAACAAAACCGGAAAAAUACUCGAAAAUGUAAUAAAUUUUC-AAAGCGAUGAAU------------------------------ (((....(((.........)))..(((((((.-........))))))).......((((((.......))))))-...)))......------------------------------ ( -19.50, z-score = -2.04, R) >droGri2.scaffold_14906 6257838 90 - 14172833 CGCACUGGCCACACGUUUCGGCAAUUUCCGGA-CAGCAAAACCGGAAAAAUACUCGAAAAUGUAAUAAAUUUAC-AAGGCGUUGAAUCUGAG------------------------- .......(((.....((((((...(((((((.-........))))))).....)))))).(((((.....))))-).)))............------------------------- ( -20.10, z-score = -1.31, R) >consensus CACGCCGGCCACACGUUUCGGCAAUUUCCGGG_CAACAAAACCGGAAAAAUACUUGAAAAUGUAAUAAAUUUCCAAAGAAGCUGAAGCUGAG_________________________ ...((..(((.........)))..(((((((..........))))))).............))...................................................... (-12.97 = -12.64 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:14 2011