| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,595,655 – 6,595,764 |
| Length | 109 |
| Max. P | 0.523377 |
| Location | 6,595,655 – 6,595,764 |
|---|---|
| Length | 109 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 84.04 |
| Shannon entropy | 0.29867 |
| G+C content | 0.29802 |
| Mean single sequence MFE | -22.78 |
| Consensus MFE | -11.08 |
| Energy contribution | -11.27 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6595655 109 + 23011544 AAUGUGUUUGUCAGUGAAAUCUUAUGAUUUCGCCAGAUUAAUUGCUCAAUCUCGAAAGUUUCA-AGUAAAUUAAAAGAAAAUUUUCCCUCCGAUUGUCAAAGAUAUUUUA (((((.((((.((((((((((....))))))))....(((((((((......(....).....-))).))))))....................)).)))).)))))... ( -20.00, z-score = -2.13, R) >droPer1.super_5 5606520 110 + 6813705 AAUAUGUUUGUCCGGGAAACCUAAUGAUUUUCACAGUUUAAUUGCUCACUCUCAAAAGUUUUUGAGUGAAUUAGGUGAGCAUUUUCUUUGGAGUUUUGAUAGAUAUAUUU ((((((((((((.((....))....((..(((.(((...((.((((((((((((((....)))))).......)))))))).))...))))))..)))))))))))))). ( -32.31, z-score = -4.03, R) >dp4.chr4_group5 1199039 110 + 2436548 AAUAUGUUUGUCCAGGAAACCUAAUGAUUUUCACAGUUUAAUUGCUCACUCUCAAAAGUUUUUGAGUGAAUUAGGAGAGCAUUUUCUUUGGAGUUUUGAUAGAUAUAUUU ((((((((((((..(....).....((..(((.(((...((.(((((.((((((((....)))))).......)).))))).))...))))))..)))))))))))))). ( -23.81, z-score = -1.12, R) >droYak2.chr2L 16004528 109 - 22324452 AAUGUGUUUGUCAGUGAAAUCUUAUGAUUUCGCCAGAUUAAUUGUUCAAUCUCGAAAGUUAUC-AGUAGAUUAAAAGAAAAUUUUUCCUCCGCUUGUCAAAGAUAUUUUA (((((.((((.((((((((((....))))))))....((((((.........(....).....-....))))))....................)).)))).)))))... ( -19.67, z-score = -1.65, R) >droEre2.scaffold_4929 15504673 109 + 26641161 AAUGUGUUUGUCAGAGAAAUCUUAUGAUUUUGCCAGAUUAAUUGCUCAAUCUCGAAAGUUUUC-AGUAAAUUAAAUGAAAAUUUUCCCUCCGAUUGCCAAAGAUAUUUUA (((((.((((.(((.((((((....))))))...(((((........))))).((((((((((-(..........))))))))))).......))).)))).)))))... ( -19.90, z-score = -1.76, R) >droSec1.super_3 2135083 109 + 7220098 AAUGUGUUUGUCACUGAAAUCUUAUGAUUUCGCCCGAUUAAUUGCUCAAUCUCGAAAGUUUUC-AGUAAAUUAAAAGAAAAUUUUCCCUCCGAUUGUCAAAGAUAUUUUA (((((.((((.((..((((((....))))))....((((........))))..((((((((((-............))))))))))........)).)))).)))))... ( -19.90, z-score = -2.19, R) >droSim1.chr2L 6388440 109 + 22036055 AAUGUGUUUGUCAGUGAAAUCUUAUGAUUUCGCCAGAUUAAUUGCUCAAUCUCGAAAGUUUUC-AGUAAAUUAAAAGAAAAUUUUCCCUCCGAUUGUCAAAGAUAUUUUA (((((.((((.((((((((((....)))))))).(((((........))))).((((((((((-............))))))))))........)).)))).)))))... ( -23.90, z-score = -3.52, R) >consensus AAUGUGUUUGUCAGUGAAAUCUUAUGAUUUCGCCAGAUUAAUUGCUCAAUCUCGAAAGUUUUC_AGUAAAUUAAAAGAAAAUUUUCCCUCCGAUUGUCAAAGAUAUUUUA .((((.((((.((((((((((....))))))).....(((((((((......(....)......))))).))))...................))).)))).)))).... (-11.08 = -11.27 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:38 2011