| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,261,292 – 3,261,396 |
| Length | 104 |
| Max. P | 0.522571 |
| Location | 3,261,292 – 3,261,396 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 66.88 |
| Shannon entropy | 0.62292 |
| G+C content | 0.42205 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -11.07 |
| Energy contribution | -9.97 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3261292 104 - 27905053 UCGAUUUGAGCUCGGGCCAGUCCGUAACUCUUUUAGGGUCUGACUUGGCUUAAACUUGAAUGGGCUCAAAGGAAAGUGUUUCGACUGGUGUACUUGA--AGCUUGU (((((((((((.((((.(((.((.(((.....))).)).))).))))))))))).))))(..((((..(((...(((......)))......)))..--))))..) ( -30.20, z-score = -0.90, R) >droAna3.scaffold_13340 3045441 88 - 23697760 -UUUUUUGAGUUCAGAAAACCCCGUAACUCUAUUUAAAUCAAGCUAAGUUUAAAGUUGCAGGAACCUCAGGGUAAAUUUCAUAGCCAGU----------------- -....(((.(((..((((..((.((((((..(((((........)))))....)))))).)).(((....)))...))))..)))))).----------------- ( -14.10, z-score = -0.33, R) >droSim1.chr3R 3305638 88 - 27517382 UCGAUUUGAGUUCGGGCCAGUCCUUAACUCUUUUAGGGUUUGACUUGGCUUAAACUUGAAUGAGCUCAAAAGGAAG-CUUGAAGCUUGU----------------- ...(((..((((..((((((((...(((((.....))))).))).)))))..))))..)))(((((...(((....-)))..)))))..----------------- ( -32.10, z-score = -3.37, R) >droSec1.super_6 3352484 104 - 4358794 UCGAUUUGAGUUCGGGCCAGUCCUUAACUCUUUUAAGGUCUGACUUGGCUUAAACUUGAAUGGGCUCAAAGGGAAGUGUUACGACUCGUUCACUUGA--AGCUUGU (((((((((((.((((.(((.((((((.....)))))).))).))))))))))).))))(..((((..((((((.(.((....)).).))).)))..--))))..) ( -30.90, z-score = -1.45, R) >droYak2.chr3R_random 956045 103 - 3277457 UCGAUUUAAGUUCGGCCCCUCCAGUAACUCUUUUAAGGUCUGACUUGGCCUGAACCUAAAUGGGCUCAGAGAGAAA-AUUUCGACUUGUGUACUUGA--AACUUGU ....(((((((.(((.....)).....((((((..(((((......)))))((.(((....))).))))))))...-............).))))))--)...... ( -20.40, z-score = 0.77, R) >droEre2.scaffold_4770 3527308 105 - 17746568 UCGAUUUGAGUGCGGGCCAGUCAGUAACUCUUUUAAGGUCUGAGUUGGCCUAAACUUGAAUGGGCUCAGAGGGAAU-GUUUCGACUUGAAACUUACAAUAACUUGU ((.(((..(((..(((((((((((...((......))..)))).)))))))..)))..))).))............-(((((.....))))).............. ( -28.50, z-score = -0.94, R) >consensus UCGAUUUGAGUUCGGGCCAGUCCGUAACUCUUUUAAGGUCUGACUUGGCUUAAACUUGAAUGGGCUCAAAGGGAAG_GUUUCGACUUGU__ACUUGA__A_CUUGU ....(((((((((((.....)).............(((((......)))))..........))))))))).................................... (-11.07 = -9.97 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:10 2011