| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,257,046 – 3,257,101 |
| Length | 55 |
| Max. P | 0.704677 |
| Location | 3,257,046 – 3,257,101 |
|---|---|
| Length | 55 |
| Sequences | 8 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 94.94 |
| Shannon entropy | 0.09695 |
| G+C content | 0.37273 |
| Mean single sequence MFE | -10.38 |
| Consensus MFE | -9.93 |
| Energy contribution | -9.93 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.704677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3257046 55 + 27905053 UUUUUCAACGAAAAUUUUCAGCUCGACUUAUGUUGAAGUCGUGCCAUUGCACUUU ....................((.((((((......)))))).))........... ( -9.90, z-score = -1.04, R) >droSim1.chr3R 3301435 55 + 27517382 UUUUUCAACGAAAAUUUUCAGCUCGACUUAUGUUGAAGUCGUGCCAUUGCACUUU ....................((.((((((......)))))).))........... ( -9.90, z-score = -1.04, R) >droSec1.super_6 3348321 55 + 4358794 UUUUUCAACGAAAAUUUUCAGCUCGACUUAUGUUGAAGUCGUGCCAUUGCACUUU ....................((.((((((......)))))).))........... ( -9.90, z-score = -1.04, R) >droYak2.chr3R_random 951035 55 + 3277457 UUUUUUAACGAAAAUUUUCAGCUCGACUUAUGUUGAAGUCGUGCCAUUGCACUUU ....................((.((((((......)))))).))........... ( -9.90, z-score = -1.27, R) >droEre2.scaffold_4770 3521353 55 + 17746568 UUUUUCAACAAAAAUUUUCAGCUCGACUUAUGUUGAAGUCGUGCCAUUGCACUUG ....................((.((((((......)))))).))........... ( -9.90, z-score = -1.24, R) >droAna3.scaffold_13340 3042073 55 + 23697760 UUUUUCAACAAAAAUUUUCAGCUCGACUUAUGUUGAAGUCGUGCCAUUGCACUUU ....................((.((((((......)))))).))........... ( -9.90, z-score = -1.45, R) >dp4.chr2 26660842 55 + 30794189 UUUCUCAACAGAAAUUUUCAGCUCGACUUGUGUCGAAGUCGUGCCAUUGCACUUU (((((....)))))......(((((((....)))).))).((((....))))... ( -11.80, z-score = -1.15, R) >droPer1.super_6 1977501 55 + 6141320 UUUCUCAACAGAAAUUUUCAGCUCGACUUGUGUCGAAGUCGUGCCAUUGCACUUU (((((....)))))......(((((((....)))).))).((((....))))... ( -11.80, z-score = -1.15, R) >consensus UUUUUCAACAAAAAUUUUCAGCUCGACUUAUGUUGAAGUCGUGCCAUUGCACUUU ....................((.((((((......)))))).))........... ( -9.93 = -9.93 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:09 2011