| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,250,866 – 3,250,917 |
| Length | 51 |
| Max. P | 0.850052 |
| Location | 3,250,866 – 3,250,917 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 92.48 |
| Shannon entropy | 0.12486 |
| G+C content | 0.59314 |
| Mean single sequence MFE | -11.29 |
| Consensus MFE | -10.91 |
| Energy contribution | -10.79 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3250866 51 - 27905053 CCGCCCCAGUGAGCCAUCGCAAUUGAGCUUCGCUCGCCAUUCCGUUCACGU ........((((((.........(((((...))))).......)))))).. ( -10.59, z-score = -0.98, R) >droEre2.scaffold_4770 3515308 51 - 17746568 CCGCCCAAGUGAACCAUCGCAAUCGAGCCUGGCUCGCCAUUCUGUUCACGU ........((((((.........(((((...))))).......)))))).. ( -12.29, z-score = -1.20, R) >droSec1.super_6 3342293 51 - 4358794 CCGCCCAAGUGAACCAUCGCAAUCGAGCUUUGCUCGCCAUUCCGUUCACGU ........((((((.........(((((...))))).......)))))).. ( -12.29, z-score = -2.18, R) >droSim1.chr3R 3295354 51 - 27517382 CCGCCCAAGCGAACCAUCGCAAUCGAGCUUCGCUCGCCAUUCCGUUCACGU ..((....((((....))))....((((...)))))).............. ( -10.00, z-score = -0.86, R) >consensus CCGCCCAAGUGAACCAUCGCAAUCGAGCUUCGCUCGCCAUUCCGUUCACGU ........((((((.........(((((...))))).......)))))).. (-10.91 = -10.79 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:08 2011