| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,186,567 – 3,186,662 |
| Length | 95 |
| Max. P | 0.986877 |
| Location | 3,186,567 – 3,186,662 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.57 |
| Shannon entropy | 0.41692 |
| G+C content | 0.52950 |
| Mean single sequence MFE | -37.74 |
| Consensus MFE | -22.71 |
| Energy contribution | -24.90 |
| Covariance contribution | 2.19 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.986877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3186567 95 + 27905053 ACACUUGCGACCGCAGAUAAGGCGCAAAAUGAACGCAGAGCGUCUUUUGU-GCAUGUGUUUGUGGGUGCGAGUGUGUGAAGGUGGAGAGUGUGCGU--------------- (((((((((.(((((((((..((((((((.((.(((...)))))))))))-))...))))))))).))))))))).....................--------------- ( -39.30, z-score = -3.51, R) >droSim1.chr3R 3230851 95 + 27517382 ACACUUGCGACCGCAGAUAAGGCGCAAAAUGAACGCAGAGCGUCUUUUGU-GCAUGUGUUUGUGGGUGCGAGUGUGUGGCAGUGGAGAGUGUGCGU--------------- (((((((((.(((((((((..((((((((.((.(((...)))))))))))-))...))))))))).)))))))))...(((..........)))..--------------- ( -40.20, z-score = -3.03, R) >droSec1.super_6 3273024 95 + 4358794 ACACUUGCGACCGCAGAUAAGGCGCAAAAUGAACGCAGAGCGUCUUUUGU-GCAUGUGUUUGUGGGUGCGAGUGUGUGGCAGUGGAGAGUGUGCGU--------------- (((((((((.(((((((((..((((((((.((.(((...)))))))))))-))...))))))))).)))))))))...(((..........)))..--------------- ( -40.20, z-score = -3.03, R) >droYak2.chr3R 21678528 110 - 28832112 ACACUUGCGACCGCAGAUAAGGCGCAGAAUGAACGCAGGGCGUCUUUUGU-GCAUGUGUUUGUGGGAGCGAGUGUGCGGCAGUUGAGAGUGUGCGUGGUGCGAGUGUGCGU ((((((((..(((((((((..((((((((.((.(((...)))))))))))-))...)))))))))..))))))))(((.((.(((...(....)......))).))))).. ( -46.10, z-score = -2.48, R) >droEre2.scaffold_4770 3447407 95 + 17746568 ACACUUGCGACCGCAGAUAAGGCGCAAAAUGAACGCAGGACGUCUUUUGU-GCAUGUGUUUGUGGGUGCGAGUUUGUGGCAGCUGGGUGUGUGCGU--------------- ((((((((..((((((((...((((...(..(((((((.(((.....)))-.).))))))..)..))))..))))))))..)).))))))......--------------- ( -36.80, z-score = -1.53, R) >droAna3.scaffold_13340 2977944 86 + 23697760 ACACUUGCGACCGCAGAUAAGGCGCAAAAUGAACGCAGCGCGUCUUUCGU-GAGUAUGUGGGUAUGUAUGAGGGUGUGCUGUGUGUG------------------------ .((((((((.((........))))))).....((((((((((.(((((((-(.((((....)))).)))))))))))))))))))))------------------------ ( -34.80, z-score = -2.89, R) >droWil1.scaffold_181089 5297918 95 - 12369635 GCACUUGCGACCGCAGAUAAGGCGUAAAAUGAACGCAACGCGUCUUUUUUCAUCUGUAUUCCUGCUACUGUGUAUCUG-CGGGUCUAUGUGUGUGU--------------- ((((......((((((((((((.(((..((((((((...))))......))))...))).)))((....)).))))))-)))......))))....--------------- ( -26.80, z-score = -0.98, R) >consensus ACACUUGCGACCGCAGAUAAGGCGCAAAAUGAACGCAGAGCGUCUUUUGU_GCAUGUGUUUGUGGGUGCGAGUGUGUGGCAGUUGAGAGUGUGCGU_______________ (((((((((.(((((((((..((((((((.((.(((...))))))))))).))...))))))))).))))))))).................................... (-22.71 = -24.90 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:01 2011