| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,174,882 – 3,174,973 |
| Length | 91 |
| Max. P | 0.766057 |
| Location | 3,174,882 – 3,174,973 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 57.70 |
| Shannon entropy | 0.65218 |
| G+C content | 0.35785 |
| Mean single sequence MFE | -22.88 |
| Consensus MFE | -7.66 |
| Energy contribution | -8.94 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.766057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3174882 91 + 27905053 ----------------------UUGAAUUGUAGCUUGCAAAUUUUUAAGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAAUGAAAGGAGA----UCAACGAUCGAGUUAGUUCUGGU--- ----------------------..((((((.((((((........))))))..((((((.((((((((..(........)..))))))))----)))))).......))))))....--- ( -24.70, z-score = -2.52, R) >droEre2.scaffold_4770 3440970 95 + 17746568 ----------------------UUGAAUGGUAGCUUGCAGAUUCUCAAGCUUGCGUUGAGUUUCAUUUUGUAGGCUCUGAAUAAAGGAGAGAAAUCAUAGGUCGAGUUAAGCUAAGU--- ----------------------........((((((...((((((((((((((((.((.....))...)))))))).)))........((....)).......)))))))))))...--- ( -21.50, z-score = 0.04, R) >droSec1.super_6 3267083 84 + 4358794 ----------------------UUGAAUUGUAUCUUUCAAAUUUUUAAGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAAUAAGAGGAGA----UCAACGAUCGAGUUAG---------- ----------------------(((((........))))).......(((((.((((((.(((((((((((........)))))))))))----))))))...)))))..---------- ( -22.80, z-score = -3.12, R) >droSim1.chr3R 3224340 78 + 27517382 ----------------------UUGAAUUGUAUCUUGCAAAUUUUUUAGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAGUGAAAGGAGA----UCAACGAUCG---------------- ----------------------..((.((((.....)))).............((((((.((((((((..(........)..))))))))----)))))).)).---------------- ( -18.70, z-score = -2.01, R) >droGri2.scaffold_14906 6158896 116 - 14172833 UUGAACUUAAUAUAAAAUGUAAUUUUUGUGUAAUUUUGCAACUUUGUAGCUUUAUUGUGGUCCAGUUAUUUAGGCUGUGGAGAGCGAAUC----CUUUGAGUCACUAUCAGCCUGCUGAU .(((.((((((((((((......))))))))...(((((..(((..((((((.((((.....)))).....))))))..))).)))))..----...)))))))..(((((....))))) ( -26.70, z-score = -1.21, R) >consensus ______________________UUGAAUUGUAGCUUGCAAAUUUUUAAGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAAUGAAAGGAGA____UCAACGAUCGAGUUAA______U___ .....................................................((((((.(((((((((((........)))))))))))....)))))).................... ( -7.66 = -8.94 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:57 2011