| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,169,592 – 3,169,656 |
| Length | 64 |
| Max. P | 0.694952 |
| Location | 3,169,592 – 3,169,656 |
|---|---|
| Length | 64 |
| Sequences | 8 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 70.89 |
| Shannon entropy | 0.55956 |
| G+C content | 0.43865 |
| Mean single sequence MFE | -14.01 |
| Consensus MFE | -6.18 |
| Energy contribution | -6.82 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3169592 64 + 27905053 ---------GAGAAUGUCCUGCAAUUGACAAUUGUCCAUUGUGUUUAAGGAGAAGAUCUCGCCCUUCUCCUGC ---------...........(((((.(((....))).))))).....((((((((........)))))))).. ( -18.40, z-score = -2.92, R) >dp4.chr2 26575455 60 + 30794189 ---------AAGAAUGUCCUGCAAUUGACAAUUGUCCUUUGUGUGUGUGUGUGUUUGUGUGCAUGUGCC---- ---------...........((((..(((....)))..))))(..((((..(......)..))))..).---- ( -12.00, z-score = -1.73, R) >droAna3.scaffold_13340 2963143 63 + 23697760 ---------AGGAAUCUUCUGCAAUUGACAAUUGUCCAUUGUGUUUAAGGCGAAGAUUUU-UCCUCCCCUGGC ---------((((((((((.(((((.(((....))).)))))((.....)))))))))))-)((......)). ( -15.00, z-score = -1.22, R) >droEre2.scaffold_4770 3435680 64 + 17746568 ---------AAGAAUGUCCUGCAAUUGACAAUUGUCCAUUGUGUUUAAGGAGAAGACCCCGCCCUCCUCUGGC ---------...........(((((.(((....))).)))))(((..(((((...........)))))..))) ( -13.00, z-score = -0.76, R) >droYak2.chr3R 21667316 64 - 28832112 ---------GAGAAUGUCCUGCAAUUGACAAUUGUUCAUUGUGUUUAAGGAGAAGACCUCGUCUUCCUCUUGC ---------(((....(((((((((.(((....))).))))).....))))((((((...))))))))).... ( -15.70, z-score = -1.61, R) >droSec1.super_6 3261731 64 + 4358794 ---------GAGAAUGUCCUGCAAUUGACAAUUGUCCAUUGUGUUUAAGGAGAAGAUCUCGCCCGUAUCCUGC ---------((((.(.(((((((((.(((....))).))))).....)))).)...))))............. ( -14.00, z-score = -1.36, R) >droSim1.chr3R 3218951 64 + 27517382 ---------GAGAAUGUCCUGCAAUUGACAAUUGUCCAUUGUGUUUAAGGAGAAGAUCUCGCCCUUCUCUUGC ---------...........(((((.(((....))).))))).....((((((((........)))))))).. ( -15.70, z-score = -1.71, R) >droWil1.scaffold_181089 5312969 73 - 12369635 AAAAAUCUUCCUGCUGUCCUGCAAUUGACAAUUGUCUUUUACUUUUACUUGAGGCAACCUGCUUAUUCUCGCC ............((((((........)))).(((((((............)))))))...))........... ( -8.30, z-score = -0.34, R) >consensus _________GAGAAUGUCCUGCAAUUGACAAUUGUCCAUUGUGUUUAAGGAGAAGAUCUCGCCCUUCUCUUGC ....................(((((.(((....))).))))).....(((((.((........)).))))).. ( -6.18 = -6.82 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:56 2011