| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,164,621 – 3,164,712 |
| Length | 91 |
| Max. P | 0.681569 |
| Location | 3,164,621 – 3,164,712 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 72.97 |
| Shannon entropy | 0.55392 |
| G+C content | 0.48934 |
| Mean single sequence MFE | -25.17 |
| Consensus MFE | -15.09 |
| Energy contribution | -15.16 |
| Covariance contribution | 0.07 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3164621 91 - 27905053 GUUAAUUACG----AGAAGAGA-----GUCUGA---------CCAGGCCUAAUCGCAGUUUAAGUACACGGUAGUGGUCUC--GGCUUAAACGCGAAUUACGCCCAAUGCC--- ..........----........-----......---------...(((.(((((((.((((((((.(((....))).....--.))))))))))).)))).))).......--- ( -21.40, z-score = -0.15, R) >droEre2.scaffold_4770 3430738 91 - 17746568 GUUAAUUACG----AGAAGAGA-----GUCUGA---------CCAGGCCUAAUCGCAGUUUAAGUACACGGUAGUGGUCUC--GGCUUAAACGCGAAUUACGCCCAAUGCC--- ..........----........-----......---------...(((.(((((((.((((((((.(((....))).....--.))))))))))).)))).))).......--- ( -21.40, z-score = -0.15, R) >droYak2.chr3R_random 884332 96 - 3277457 GUUAAUUACG----AGAAGAGAGUCUGGUCUGA---------GCAGGCCUAAUCGCAGUUUAAGUACACGGUAGUGGUCUC--GGCUUAAACGCGAAUUACGCCCAAUGCC--- (((....((.----(((......))).))...)---------)).(((.(((((((.((((((((.(((....))).....--.))))))))))).)))).))).......--- ( -25.80, z-score = -0.48, R) >droSec1.super_6 3256694 91 - 4358794 GUUAAUUACG----CGAAGAGA-----GUCUGA---------CCAGGCCUAAUCGCAGUUUAAGUACACGGUAGUGGUCUC--GGCUUAAACGCGAAUUACGCCCAAUGCC--- .........(----(((..((.-----((((..---------..))))))..)))).((((((((.(((....))).....--.))))))))(((.....)))........--- ( -24.60, z-score = -0.84, R) >droSim1.chr3R 3213453 91 - 27517382 GUUAAUUACG----CGAAGAGA-----GCCUGA---------CCAGGCCUAAUCGCAGUUUAAGUACACGGUAGUGGUCUC--GGCUUAAACGCGAAUUACGCCCAAUGCC--- .........(----(((..((.-----((((..---------..))))))..)))).((((((((.(((....))).....--.))))))))(((.....)))........--- ( -27.30, z-score = -1.61, R) >droAna3.scaffold_13340 2958922 92 - 23697760 GCUAAUUACG----AGAAGAGU-----CUCUGG--------CCCAGGCCUAAUCGCUGUUUAAGUACACAGUAGUGGUCGC--GGCUUAAACGCGAAUUACGCCCAAUGUC--- ((((.....(----(((....)-----))))))--------)...(((.(((((((.((((((((.(((....))).....--.))))))))))).)))).))).......--- ( -25.10, z-score = -0.68, R) >dp4.chr2 26570990 98 - 30794189 GCUAAUUACA----AG-CGACCCAUGUGGCAGA---------CCAAGCCUAAUCGCUGUUUAAGUACACGGUAGUGGCUUU--GGCUUAAACGCGAAUUACGCCCAAUGUCCGC (((.......----))-).......((((((..---------....((.(((((((.((((((((.((.(((....))).)--)))))))))))).)))).))....)).)))) ( -24.70, z-score = 0.04, R) >droPer1.super_6 1899834 98 - 6141320 GCUAAUUACA----AG-CGACCCAUGUGGCAGA---------CCAAGCCUAAUCGCUGUUUAAGUACACGGUAGUGGCUUU--GGCUUAAACGCGAAUUACGCCCAAUGUCCGC (((.......----))-).......((((((..---------....((.(((((((.((((((((.((.(((....))).)--)))))))))))).)))).))....)).)))) ( -24.70, z-score = 0.04, R) >droWil1.scaffold_181089 7051880 107 - 12369635 ACUAAUUACC----CACCGAGGAGAAUAUAAAACUUACUCUUCGAGGCUUAAUCGCUGUUUAAGUACACGAUAGUCGCUUUUGGCCAUAAACGCGAAUUACGCCCAAUGUC--- ..........----...(((((((.............))))))).(((.(((((((.(((((.(..((((.....))....))..).)))))))).)))).))).......--- ( -22.52, z-score = -1.24, R) >droVir3.scaffold_12855 4149191 95 + 10161210 GCUAAUUACAAGAG----CCCCACAACAGAGCC----AGAGUCCGGGCUUAAUCGCUGUUUAAGUACACGGUCGU--------GGCUUAAAUGCGAAUUACGCCCAAUGCG--- ((.........(.(----((........).)))----.......((((.(((((((.((((((((.(((....))--------)))))))))))).)))).))))...)).--- ( -26.00, z-score = -1.16, R) >droMoj3.scaffold_6540 27821658 100 + 34148556 GCUAAUUGCGUCCAAGCCGAGGCAAGAGUCGACUGUG---UACCAGGCCUAAUCGCUGUUUAAGUACACGGUCGU--------GGCUUAAAUGUGAAUUACGCCCAAUGCG--- (((((((((((..((((((.(((....)))(((((((---(((..(((......)))......)))))))))).)--------)))))..)))).))))).))........--- ( -32.90, z-score = -1.98, R) >droGri2.scaffold_14906 8044573 98 - 14172833 GCUAAUUACAAAGAUACCCACCGCCACACAGAC-----GAUGCAGGGCUUAAUCGCUGUUUAAGUACACGGUUGU--------GGCUUAAAUGCGAAUUACGCCCAAUGCG--- .................................-----...(((((((.(((((((.((((((((.(((....))--------)))))))))))).)))).))))..))).--- ( -25.60, z-score = -1.23, R) >consensus GCUAAUUACG____AGAAGAGA_____GUCUGA_________CCAGGCCUAAUCGCUGUUUAAGUACACGGUAGUGGUCUC__GGCUUAAACGCGAAUUACGCCCAAUGCC___ .............................................(((.(((((((.((((((((...................))))))))))).)))).))).......... (-15.09 = -15.16 + 0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:53 2011