| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,153,714 – 3,153,805 |
| Length | 91 |
| Max. P | 0.787788 |
| Location | 3,153,714 – 3,153,805 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 71.35 |
| Shannon entropy | 0.54255 |
| G+C content | 0.48141 |
| Mean single sequence MFE | -23.21 |
| Consensus MFE | -8.30 |
| Energy contribution | -8.00 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787788 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3153714 91 + 27905053 GAGCAGAUUUAAACGAAGGUUAAGAGUUGCAUACGUUUAAUCGGGCAGAU--CGGACUUGCAACAGAAAGACGAACUGGGGUCCACAGACCAC------------ ...(((.(((.(((....))).)))((((((...(((..(((.....)))--..))).))))))...........))).((((....))))..------------ ( -24.10, z-score = -2.60, R) >dp4.chr2 26561011 105 + 30794189 GAGCAGAUUUAAGCGAAGGUUAAGAGUUGCAUACGUUUAAUCGGGAAGAGGCUGAGGCAGAGGCAGAGCCCGAGAGACGAAUCAAGACCAUGUUGCGGCAUCCGC ((((((.(((.(((....))).))).))))...(((((..(((((.....(((........)))....))))).)))))..))...........((((...)))) ( -27.90, z-score = -1.00, R) >droAna3.scaffold_13340 2947964 70 + 23697760 GAGCGGAUUUAAACGAAGGUUAAGAGUUGCAUACGUUUAAUC---CAGAU--UGGAGCUGGAAGCCAGAGACCAC------------------------------ ....(((((.(((((...((........))...)))))))))---)....--(((..((((...))))...))).------------------------------ ( -16.60, z-score = -2.14, R) >droEre2.scaffold_4770 3419303 91 + 17746568 GAGCAGAUUUAAGCGAAGGUUGAGAGUUGCAUACGUUUAAUCGGGCAGAU--CGGACUUGCAACAGAAAUACGAGCUGGGGUGCAGCGACCAC------------ ..((........))...((((....((((((...(((..(((.....)))--..))).))))))..........((((.....))))))))..------------ ( -25.10, z-score = -1.72, R) >droYak2.chr3R_random 871261 91 + 3277457 GAGCAGAUUUAAACGAAGGUUAAGAGUUGCAUACGUUUAAUCGGCCAGAU--CGGACUUGCAACAGAAAUACGAGCUGGGGUCCAGCGACCAC------------ .................((((....((((((...(((..(((.....)))--..))).))))))..........(((((...)))))))))..------------ ( -25.70, z-score = -2.43, R) >droSec1.super_6 3245634 91 + 4358794 GAGCAGAUUUAAACGAAGGUUAAGAGUUGCAUACGUUUAAUCGGGCAGAU--CGGACUUGCAACAGAAAUACGAACUGGGGUCCAGAGACCAC------------ ...(((.(((.(((....))).)))((((((...(((..(((.....)))--..))).))))))...........))).((((....))))..------------ ( -24.10, z-score = -2.76, R) >droSim1.chr3R 3202319 91 + 27517382 GAGCAGAUUUAAACGAAGGUUAAGAGUUGCAUACGUUUAAUCGGGCAGAU--CGGACUUGCAACAGAAAUACGAACUGGGGUCCAGAGACCAC------------ ...(((.(((.(((....))).)))((((((...(((..(((.....)))--..))).))))))...........))).((((....))))..------------ ( -24.10, z-score = -2.76, R) >droVir3.scaffold_12855 6025148 70 + 10161210 GAGCAGAUUUAAACGAAGGUUAAGAGUUGCAUACGUUUAAUCUGGUACAA--CGAGGCUGCGGCCAGGCAGC--------------------------------- .(.((((((.(((((...((........))...))))))))))).)....--....(((((......)))))--------------------------------- ( -18.10, z-score = -1.28, R) >consensus GAGCAGAUUUAAACGAAGGUUAAGAGUUGCAUACGUUUAAUCGGGCAGAU__CGGACUUGCAACAGAAAUACGAACUGGGGUCCAGAGACCAC____________ ..((((.(((.(((....))).))).))))........................................................................... ( -8.30 = -8.00 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:51 2011