| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,146,357 – 3,146,453 |
| Length | 96 |
| Max. P | 0.529201 |
| Location | 3,146,357 – 3,146,453 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 73.92 |
| Shannon entropy | 0.51875 |
| G+C content | 0.40850 |
| Mean single sequence MFE | -25.14 |
| Consensus MFE | -13.64 |
| Energy contribution | -13.67 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3146357 96 - 27905053 -----------------ACUGCGAGGAGAAGUUU--CGUAUCUUAAUCAUGAUUUUAUGCUAAUGUGUCGCAGCGUCUU---GGAGCUGCCAGAUUACAAGAUACCGAAAUGCGACAA -----------------.......(..(..((((--((((((((((((..(((..(((....))).)))(((((.....---...)))))..)))))..))))).)))))).)..).. ( -23.00, z-score = -0.23, R) >droPer1.super_6 1883065 116 - 6141320 AUUCCGGCACUCUGGCCAUUGCCAGUAGAAAUUC--UUUAUCUUAAUCAUGAUUUUAUGCUAAUGUGUCGCAGCGUCUUGUAGUAGCUGCAAGAUUACAAGAUACCAAACGGCGACAA .....(((((((((((....))))).))......--...(((........)))....))))....((((((.(..(((((((((.........)))))))))..)......)))))). ( -29.00, z-score = -1.18, R) >dp4.chr2 26554204 116 - 30794189 AUUCCGGCUUUCUGGCCAUUGCCAGUAGAAAUUC--UUUAUCUUAAUCAUGAUUUUAUGCUAAUGUGUCGCAGCGUCUUGUAGUAGCUGCAAGAUUACAAGAUACCAAACGGCGACAA .....((((....)))).(((((((((.(((.((--..............)).))).))))...(((((.....(((((((((...))))))))).....))))).....)))))... ( -30.14, z-score = -1.63, R) >droAna3.scaffold_13340 2941344 96 - 23697760 -----------------ACUGCCUCUAGAAGUUU--CGUAUCUUAAUCAUGAUUUUAUGCUAAUGUGUCGCAGCGUCUU---GUAAGUGCCAGAUUACAAGAUACCGAACUGCGACAA -----------------............(((..--...(((........))).....)))....((((((((.(((((---((((........)))))))))......)))))))). ( -23.10, z-score = -1.44, R) >droEre2.scaffold_4770 3411968 96 - 17746568 -----------------ACUGCCAGGAGAAGUUU--CGUAUCUUAAUCAUGAUUUUAUGCUAAUGUGUCGCAGCGUCUU---GUAGCUGCCAGAUUACAAGAUACCGAGCUGCGACAA -----------------............(((..--...(((........))).....)))....((((((((((((((---(((((.....).))))))))).....))))))))). ( -26.40, z-score = -1.26, R) >droYak2.chr3R_random 861889 96 - 3277457 -----------------ACUGCCAGGCGAAGUUU--CGUAUCUUAAUCAUGAUUUUAUGCUAAUGUGUCGCAGCGUCUU---GUAGCUGCCAGAUUACAAGAUACGGGGCAGCGAGAA -----------------........((...((..--((((((((((((..(((..(((....))).)))(((((.....---...)))))..)))))..)))))))..)).))..... ( -29.60, z-score = -1.38, R) >droSec1.super_6 3238568 96 - 4358794 -----------------ACUGCCAGGAGAAGUUU--CGUAUCUUAAUCAUGAUUUUAUGCUAAUGUGUCGCAGCGUCUU---GGAGCUGCCAGAUUACAAGAUACCGAGCUGCGACAA -----------------.......(..(.(((((--.(((((((((((..(((..(((....))).)))(((((.....---...)))))..)))))..)))))).))))).)..).. ( -25.60, z-score = -0.73, R) >droSim1.chr3R 3193031 96 - 27517382 -----------------ACUGCCAGGAGAAGUUU--CGUAUCUUAAUCAUGAUUUUAUGCUAAUGUGUCGCAGCGUCUU---GGAGCUGCCAGAUUACAAGAUACCGAGCUGCGACAA -----------------.......(..(.(((((--.(((((((((((..(((..(((....))).)))(((((.....---...)))))..)))))..)))))).))))).)..).. ( -25.60, z-score = -0.73, R) >droWil1.scaffold_181089 7032944 101 - 12369635 -------ACUUUGGCUAAAUCUCAGAACGGUUUU-ACUUAUCUUAAUCAUGAUUUUAUGCUAAUGUGUCGCAGUGUCUUGU-GUAACUGCAAGAUUACAAGAUACAUAAA-------- -------....((((.(((((.......(((...-....)))........)))))...))))(((((((.....(((((((-......))))))).....)))))))...-------- ( -21.36, z-score = -1.35, R) >droVir3.scaffold_12855 4126083 98 + 10161210 ---------------AUUCACUUGGCAUAAAUUUCACUUAUCUUAACUCUGAUUUUAUGCUAAUGUGUCGCAGCGUCUUG--UUAGCUGCAAGAUUUAAAGAUAAAAUGCGCCAA--- ---------------...(((((((((((((..(((.............))).)))))))))).))).((((..((((((--(.....)))))))............))))....--- ( -21.06, z-score = -1.23, R) >droMoj3.scaffold_6540 27795043 98 + 34148556 ---------------AUUCGCUUGGCAUAAAUUGCACUUAUCUUAACUCGGAUUUUAUGCUAAUGUGUCGCAGCGUCUUG--CUAGCUGCAAGAUUUAAAGAUAAGCAGCGCCAA--- ---------------...(((((((((((....(((...((((......))))....)))...))))))).)))).....--...(((((...(((....)))..))))).....--- ( -24.10, z-score = 0.00, R) >droGri2.scaffold_14906 8024539 101 - 14172833 ------------ACUCGACGCCAUGCAUAAAUUGCACUUAUCUUAACUCUGAUUUUAUGCUAAUGUGUCGCAGCGUCUUA--UUAGCUGCAAGAUUUAAAGAUAAAAUGCGCCAA--- ------------....(.(((..((((.....)))).(((((((((.((((((..(((....))).)))(((((......--...))))).))).)).)))))))...))).)..--- ( -22.70, z-score = -1.22, R) >consensus _________________ACUGCCAGGAGAAGUUU__CGUAUCUUAAUCAUGAUUUUAUGCUAAUGUGUCGCAGCGUCUU___GUAGCUGCAAGAUUACAAGAUACCGAGCGGCGACAA .....................................(((((((......(((..(((....))).)))(((((...........)))))........)))))))............. (-13.64 = -13.67 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:50 2011