| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,112,200 – 3,112,307 |
| Length | 107 |
| Max. P | 0.729382 |
| Location | 3,112,200 – 3,112,307 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 71.41 |
| Shannon entropy | 0.52949 |
| G+C content | 0.46928 |
| Mean single sequence MFE | -20.12 |
| Consensus MFE | -11.39 |
| Energy contribution | -11.78 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.729382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3112200 107 + 27905053 -------AAACAUGAAAAGUUAAAUAACAUCCCAACCCUCUCUGACCAGCAUUUACCUCCCUAACC-------GCGUGUCCCUGGUCUUCUUCCAGGAUCCGCUUCGCCAUGGCCAGCCUG -------..................................(((.(((((..(((......)))..-------(((.(..(((((.......)))))..))))...))..))).))).... ( -17.40, z-score = -0.61, R) >droGri2.scaffold_14906 6087253 99 - 14172833 -------AAACUUGUAAAUGUGAAAAACAAAAUGAUCUCAUUUGGUAAGUGAUUCCAU---------------GUGACAAUUUGUGUUACUUGCAGCCUACGAUUUGCUGUUGCAAGCUUA -------...((((((...((((...(((((.((...((((.(((.((....))))).---------------)))))).))))).))))..(((((.........))))))))))).... ( -22.40, z-score = -1.51, R) >droEre2.scaffold_4770 3376764 109 + 17746568 AUUAUACUGACAUGCAAAGUUGAAUAACAUCUUUACCCUCUCUAGCCUGCAUUUCC-----UAACC-------GCGUGUUCCUGGUCUCCUUCCAGGAUCCGCUUCGCCAUGGCCAGCCUG ......(((.(((((((((.((.....)).))))......................-----.....-------(((.(.((((((.......)))))).))))...).))))..))).... ( -22.40, z-score = -1.25, R) >droYak2.chr3R 21605835 121 - 28832112 AAUAUACUAACAUGAAAAGCUGAAUAACAUCCAUACCCUCUCAAGCCAACAUUUCCCUUGCUAAUCUCCUCAAGCGUGUUCCUGGUCUUCUUCCAGAAUCCGCUUCGCCAUGGCCAGCCUG ..................((((.................................................(((((..(((.(((.......))))))..))))).((....))))))... ( -19.00, z-score = -0.96, R) >droSec1.super_6 3205007 114 + 4358794 AUUUUACUACCAUGAAAAGUUGAAUAACAUCCCAACCCUCUCUGAUCAGCAUUUUCCUCCCUAACC-------GCGUGUCCCUGGUCUUCUUCCAGGAUCCGCUUCGCCAUGGCCAGCCUG .........(((((....(((((......................)))))................-------(((.(..(((((.......)))))..)))).....)))))........ ( -21.75, z-score = -1.55, R) >droSim1.chr3R 3158310 114 + 27517382 AUUUUACUAACAUAAAAAGUUGAAUAACAUCCCAACCCUCUCUGACCAGCAUUUCCCUCCCUAACC-------GCGUGUCCCUGGUCUUCUUCCAGGAUCCGCUUCGCCAUGGCCAGCCUG ..................((((............................................-------(((.(..(((((.......)))))..))))...((....))))))... ( -17.80, z-score = -0.61, R) >consensus AUU_UACUAACAUGAAAAGUUGAAUAACAUCCCAACCCUCUCUGACCAGCAUUUCCCUCCCUAACC_______GCGUGUCCCUGGUCUUCUUCCAGGAUCCGCUUCGCCAUGGCCAGCCUG ..................((((...................................................(((.((((.(((.......))))))).)))...((....))))))... (-11.39 = -11.78 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:46 2011