| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,107,572 – 3,107,665 |
| Length | 93 |
| Max. P | 0.759673 |
| Location | 3,107,572 – 3,107,665 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 89.58 |
| Shannon entropy | 0.16389 |
| G+C content | 0.49723 |
| Mean single sequence MFE | -23.27 |
| Consensus MFE | -21.80 |
| Energy contribution | -22.30 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.759673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3107572 93 + 27905053 ------GUCACACUCGCAUCCACAUCCACUUCCGUAUCCGUAUCGGUAUCGUUAUCCUUUGUUGAUAUCGUCCUCGGCGGUACGGACUCAAGGAACAUG ------..................(((...((((((.((((..((((((((.((.....)).))))))))......)))))))))).....)))..... ( -23.60, z-score = -1.50, R) >droSim1.chrU 471842 93 + 15797150 ------GUCACACUCGCAUCCACAUCCACUUCCGUAUCCGUAUAGGUAUCUUUAUAGAGUGUUGAUAUCGUCCUAGGCGGUACGGACUCAAGGAACAUG ------..................(((...((((((.((((.((((((((..(((...)))..))))....)))).)))))))))).....)))..... ( -22.30, z-score = -0.82, R) >droSec1.super_6 3200320 93 + 4358794 ------GUCACACUCGCAUCCACAUCCACUUCCGUAUCCGUAUCGGUAUCGUUAUCCUUUGUUGAUAUCGUCCUCGGCGGUACGGACUCAAGGAACAUG ------..................(((...((((((.((((..((((((((.((.....)).))))))))......)))))))))).....)))..... ( -23.60, z-score = -1.50, R) >droYak2.chr3R 21600656 99 - 28832112 GUCACACGCGCAUCCACAUUCACAUCCACUUCCGUAUCCGUAUCGGUAUCGUUAUCCUUUGUUGAUAUCGUCCUCGGCGGUACGGACUCAAGGAACAUG ........................(((...((((((.((((..((((((((.((.....)).))))))))......)))))))))).....)))..... ( -23.60, z-score = -1.05, R) >consensus ______GUCACACUCGCAUCCACAUCCACUUCCGUAUCCGUAUCGGUAUCGUUAUCCUUUGUUGAUAUCGUCCUCGGCGGUACGGACUCAAGGAACAUG ........................(((...((((((.((((..((((((((.((.....)).))))))))......)))))))))).....)))..... (-21.80 = -22.30 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:45 2011