| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,098,673 – 3,098,770 |
| Length | 97 |
| Max. P | 0.605046 |
| Location | 3,098,673 – 3,098,770 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 94.00 |
| Shannon entropy | 0.10189 |
| G+C content | 0.29809 |
| Mean single sequence MFE | -18.34 |
| Consensus MFE | -15.96 |
| Energy contribution | -16.40 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3098673 97 + 27905053 UCCAUUUUCGUUUUGUCUUUACAUUGAGAUUUCGUUCUGGAGUUAAACACUAGCUAUCGGUUAGAUUAACUUUAAUUUAGAUUAGGAUUAAAAUUAA ((((....((....(((((......)))))..))...))))(((((...(((((.....))))).)))))((((((((......))))))))..... ( -16.50, z-score = -0.78, R) >droSim1.chr3R 3144953 91 + 27517382 UCCAUUUUCGUUUUGUCUUUACAUUGAGAUUGCGUUCUGGAGUUAAACACUAGCUAUCGGUUAGAUUAACUUUAAUUUAGAUUAGGAUUAA------ (((.....(((...(((((......))))).)))...(((((((((...(((((.....))))).)))))))))..........)))....------ ( -18.50, z-score = -1.53, R) >droSec1.super_6 3191602 91 + 4358794 UCCAUUUUCGUUUUGUCUUUACAUUGAGAUUGCGUUUUGGAGUUAAACACUAGCUAUCGGUUAGAUUAACUUUAAUUUAGAUUAGGAAUAA------ (((.....(((...(((((......))))).)))..((((((((((...(((((.....))))).)))))))))).........)))....------ ( -19.50, z-score = -2.12, R) >droYak2.chr3R_random 845698 91 + 3277457 UCCAUUUUCGUUUUGUCUUUACAUUGAGAUUGCGUUUUGGAGUUAAACACUAGCUAUCGGUUAGUUUAACGUUAAUUUAGAUUAGGAUUAA------ ((((....(((...(((((......))))).)))...))))(((((..((((((.....))))))))))).(((((((......)))))))------ ( -20.00, z-score = -2.25, R) >droEre2.scaffold_4770 3363142 90 + 17746568 -UCAUUUUCGUUUUGUCUUUACAUUGAGAUUGCGUUCUGGAGUUAAACACUAGCUAUCGGUUAGUUUAACUUUAAUUUAGAUUAGGAUUAA------ -.......(((...(((((......))))).)))...(((((((((..((((((.....))))))))))))))).................------ ( -17.20, z-score = -1.31, R) >consensus UCCAUUUUCGUUUUGUCUUUACAUUGAGAUUGCGUUCUGGAGUUAAACACUAGCUAUCGGUUAGAUUAACUUUAAUUUAGAUUAGGAUUAA______ (((.....(((...(((((......))))).)))...(((((((((...(((((.....))))).)))))))))..........))).......... (-15.96 = -16.40 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:44 2011