| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,059,218 – 3,059,326 |
| Length | 108 |
| Max. P | 0.512161 |
| Location | 3,059,218 – 3,059,326 |
|---|---|
| Length | 108 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.80 |
| Shannon entropy | 0.39889 |
| G+C content | 0.39500 |
| Mean single sequence MFE | -22.87 |
| Consensus MFE | -16.45 |
| Energy contribution | -16.74 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3059218 108 - 27905053 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGCCGCUUAACC-UUUACGGUUGCU-GAGCUGACAUGAAGGAAGCAUUUGUUUUUUCCGCAGCUUUUUUUGUUGCUGU- .....(((((.((((...(((((.(((((.(((.(.((..((((-.....)))))).-))))))))).))))))))))))))........(((((.......)))))...- ( -25.60, z-score = -1.24, R) >droSim1.chr3R 3101837 108 - 27517382 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGCCGCUUAACC-UUUACGGUUGCU-GAGCUGACAUGAAGGAAGCAUUUGUUUUUUCCGCAGCGCUUUUUGUUGUUGU- .....(((((.((((...(((((.(((((.(((.(.((..((((-.....)))))).-))))))))).))))))))))))))........(((((((.....).))))))- ( -23.40, z-score = -0.21, R) >droSec1.super_6 3151486 108 - 4358794 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGCCGCUUAACC-UUUACGGUUGCU-GAGCUGACAUGAAGGAAGCAUUUGUUUUUUCCGCAGCUCUUUUUGUUGUUGU- .....(((((.((((...(((((.(((((.(((.(.((..((((-.....)))))).-))))))))).))))))))))))))........(((((.......)))))...- ( -23.10, z-score = -0.63, R) >droYak2.chr3R_random 813606 107 - 3277457 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGCCGCUUAACC-UUUACGGUUGCU-GAGCUGACAUGAAGGAAGCAUUUGUUUUUUCCGCAGCUUUUGUUUUUUUUU-- ...((((((....))))))((((.(((((.(((.(.((..((((-.....)))))).-))))))))).))))((((((...(((........)))...)))))).....-- ( -21.10, z-score = -0.51, R) >droEre2.scaffold_4770 3323248 107 - 17746568 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGCCGCUUAACC-UUUACGGUUGCU-GAGCUGACAUGAAGGAAGCAUUUGUUUUUUCCGCAGCUUUUUUUUGUUUUU-- .((((.............(((((.(((((.(((.(.((..((((-.....)))))).-))))))))).)))))((((....)))).....))))...............-- ( -20.90, z-score = -0.44, R) >droAna3.scaffold_13340 2849872 110 - 23697760 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGCCGCUUAACCUUUUACGGUUGCU-GAGCUGACAUGAAGGAAGCAUUUGUUUUUUUUUCCCCUCAGCUGAGCUCUUCU ...((((((....)))))).........((((....))))((((......))))(((-.((((((...(((((((((....))))))))).....)))))).)))...... ( -25.80, z-score = -1.77, R) >dp4.chr2 26470242 88 - 30794189 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGGCGCUUAACC-UUUACGGUCGCUGGAGCUGACAUGAAGGAAGCAUUUGUUGUACU---------------------- .....(((((.((((...(((((.(((((..(..(((....(((-.....))))))..)...))))).)))))))))))))).......---------------------- ( -21.40, z-score = -0.93, R) >droPer1.super_6 1798960 88 - 6141320 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGGCGCUUAACC-UUUACGGUCGCUGGAGCUGACAUGAAGGAAGCAUUUGUUGUACU---------------------- .....(((((.((((...(((((.(((((..(..(((....(((-.....))))))..)...))))).)))))))))))))).......---------------------- ( -21.40, z-score = -0.93, R) >droVir3.scaffold_12855 5910446 108 - 10161210 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGCCGCUUAACC-UUUACGGUUGCC-UCGCUGACAUGAAGGAAGCAUUUGUUGUUGUCUGCGCAAGUGUUGAAACUGC- ...........(((((..(((((.(((((.((....((..((((-.....)))))).-..))))))).))))).(((((((((.((.....))))))))))))))))...- ( -27.10, z-score = -1.15, R) >droMoj3.scaffold_6540 6212651 81 - 34148556 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGCCGCUUAACC-UUUACGGCUGCU-GCGCUGACAUGAAGGAAGCAUUUGU---------------------------- .....(((((.((((...(((((.((((((((.((((.......-....)))).)))-....))))).)))))))))))))).---------------------------- ( -20.00, z-score = -1.31, R) >droGri2.scaffold_14906 6028699 101 + 14172833 UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGCCGCUUAACC-UUUACGGUUGCU-GCGCUGACAUGAAGGAAGCAUUCGAAUUUUUCUCUUUUUAUGUUG-------- ..................(((((.(((((.((.((.((..((((-.....)))))).-))))))))).))))).(((((..(((........)))..))))).-------- ( -21.80, z-score = -1.67, R) >consensus UCUGUUAAAUCGUUUUAACCUUUUUGUCAAGUUGCCGCUUAACC_UUUACGGUUGCU_GAGCUGACAUGAAGGAAGCAUUUGUUUUUUCCGCAGCUUUUUUUG_U__U___ .....(((((.((((...(((((.((((((((.((((............)))).))).....))))).))))))))))))))............................. (-16.45 = -16.74 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:40 2011