| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,049,256 – 3,049,307 |
| Length | 51 |
| Max. P | 0.584808 |
| Location | 3,049,256 – 3,049,307 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 89.87 |
| Shannon entropy | 0.16277 |
| G+C content | 0.42157 |
| Mean single sequence MFE | -12.85 |
| Consensus MFE | -12.00 |
| Energy contribution | -12.12 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3049256 51 + 27905053 AAGGAGGCUAAUCCUGUUAGCUGUCAUAUGAGUUGAGGGCUUGCAAAUAUU .((((......))))((.((((.(((.......))).)))).))....... ( -14.20, z-score = -1.55, R) >droSim1.chr3R 3091848 51 + 27517382 AAGGAGGCUAAUCCUGUUAGCUGUCACAUGAGUUGAGGGCUUGCGAAUAUU .((((......))))((.((((.(((.......))).)))).))....... ( -13.30, z-score = -0.99, R) >droSec1.super_6 3141510 51 + 4358794 AAGGAGGCUAAUCCUGUUGGCUGUCAUAUGAGUUGAGGGCUUGCGAAUAUA .((((......))))((.((((.(((.......))).)))).))....... ( -14.20, z-score = -1.44, R) >droYak2.chr3R 21543334 51 - 28832112 AGGGAGGCUAAUCCUGUUAGCAAUCAUAUUAUUAGAGGGCUUGCAAAUAUU .((((......))))((.(((..((.........))..))).))....... ( -9.70, z-score = -0.20, R) >consensus AAGGAGGCUAAUCCUGUUAGCUGUCAUAUGAGUUGAGGGCUUGCAAAUAUU .((((......))))((.((((.(((.......))).)))).))....... (-12.00 = -12.12 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:39 2011