| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,047,900 – 3,048,001 |
| Length | 101 |
| Max. P | 0.587961 |
| Location | 3,047,900 – 3,048,001 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 83.32 |
| Shannon entropy | 0.30590 |
| G+C content | 0.41515 |
| Mean single sequence MFE | -21.28 |
| Consensus MFE | -13.01 |
| Energy contribution | -13.32 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3047900 101 + 27905053 ACACUUUACCCGGGCUCUC--GACUCUACUUAUACCGACCGAAUUUGC----UGAAUUACUUUUCAACAGAAUGG-AAAAACGACCUUUUAAGGUUGUUGCUCAAUGU--- ...........((((....--.................(((..((((.----((((......)))).)))).)))-...((((((((....)))))))))))).....--- ( -20.60, z-score = -1.84, R) >droSim1.chr3R 3090497 102 + 27517382 ACACUUUGCCCGGGCUCUC--GACUCUACUUAUACCGACCGAAUUUGC----UGAAUUACUUUUCAACAGAAUGGGAAAAACGACCUUUUAAGGUUGUUGCCCAAUGU--- ...........((((....--.................((.(.((((.----((((......)))).)))).).))...((((((((....)))))))))))).....--- ( -25.40, z-score = -2.54, R) >droSec1.super_6 3140177 100 + 4358794 ACACUUUGCCUGGGCUCUC--GACUCUACUUGUACCGACCGAAUUUGC----UGAAUUACUUUUCAACAGAAUGG--AAAACGACCUUUUAAGGUUGUUGCUCAAUGU--- ..........(((((....--.................(((..((((.----((((......)))).)))).)))--..((((((((....)))))))))))))....--- ( -21.10, z-score = -1.35, R) >droYak2.chr3R_random 805114 94 + 3277457 ACACUUUGCCCGG---------ACUCUACUUAUACCAACCAAACUUGC----UGAAUUACUUUUCAACAGAAUGC-AAAAACGACCUUUUAAGGUUGUUGCUCAAUGU--- ....(((((..((---------............))........(((.----((((......)))).)))...))-)))((((((((....)))))))).........--- ( -15.30, z-score = -1.27, R) >droEre2.scaffold_4770 3311889 101 + 17746568 ACACUUUGCCCGGGCUCUC--GACUGUACUUAUACCAACCGAAUUUGC----UGAAUUACUUUUCAACAGAAUUC-AAAAACGACCUUUUAAGGUUGUUGCUCAAUGU--- ...........((((....--...................((((((..----((((......))))...))))))-...((((((((....)))))))))))).....--- ( -21.30, z-score = -2.12, R) >droAna3.scaffold_13340 2838362 110 + 23697760 ACACUUUGCCGGGUCUCUCUCGGCUCACAACCAGCCCAGCGAACUUACCCACUGAAUUACUUUUCCGAAAAAUAC-UAAAACGACCUUUUAAGGUUGUUGCCUAACGCUAU .......((((((.....)))))).............((((..........(.(((......))).)........-...((((((((....))))))))......)))).. ( -24.00, z-score = -2.26, R) >consensus ACACUUUGCCCGGGCUCUC__GACUCUACUUAUACCGACCGAAUUUGC____UGAAUUACUUUUCAACAGAAUGC_AAAAACGACCUUUUAAGGUUGUUGCUCAAUGU___ ...........((((.....................................((((......)))).............((((((((....))))))))))))........ (-13.01 = -13.32 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:38 2011