| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,566,489 – 6,566,541 |
| Length | 52 |
| Max. P | 0.958119 |
| Location | 6,566,489 – 6,566,541 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 87.50 |
| Shannon entropy | 0.21260 |
| G+C content | 0.41923 |
| Mean single sequence MFE | -16.34 |
| Consensus MFE | -10.94 |
| Energy contribution | -12.50 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6566489 52 - 23011544 CGUAGAAAGUUUUUCCAAUUGCUGUUGUGGCGAUUGCAGAAACUUUUAACGC (((.((((((((((.((((((((.....)))))))).)))))))))).))). ( -20.70, z-score = -4.97, R) >droSim1.chr2L 6358839 52 - 22036055 CGUAGAAAGUUUUUCCGUUUGCUGUUGUGGCGAUUGCAGAAACUUUUGACGC (((.((((((((((.((.(((((.....))))).)).)))))))))).))). ( -16.30, z-score = -2.64, R) >droSec1.super_3 2106244 52 - 7220098 CGUAGAAAGUUUUUUCCUUUGCUGUUGUGGCGAUUGCAGAAACUUUUGACGC (((.((((((((((.(..(((((.....)))))..).)))))))))).))). ( -15.60, z-score = -2.63, R) >droYak2.chr2L 15974782 52 + 22324452 CUCAGAAAGUUUUUCCGUUGGCUGUUGUGGCGAUUGCAGAAACUUUCAAUGA ....(((((((((((.((((.(......).)))).).))))))))))..... ( -14.40, z-score = -1.71, R) >droEre2.scaffold_4929 15474695 52 - 26641161 CUCAAAAAGUUUUUCCGUUGGCUGUUGUGCCGAUUGCAGAAACUUUCAAUGA .(((.((((((((((.((((((......)))))).).)))))))))...))) ( -14.70, z-score = -2.57, R) >consensus CGUAGAAAGUUUUUCCGUUUGCUGUUGUGGCGAUUGCAGAAACUUUUAACGC (((.((((((((((.((.(((((.....))))).)).)))))))))).))). (-10.94 = -12.50 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:35 2011