| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,039,724 – 3,039,817 |
| Length | 93 |
| Max. P | 0.585651 |
| Location | 3,039,724 – 3,039,817 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 84.76 |
| Shannon entropy | 0.26953 |
| G+C content | 0.35140 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -15.03 |
| Energy contribution | -15.20 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3039724 93 + 27905053 CUGCAUUU-GCAGUGCCCGUCGAAAAGUGCC------CG---UCGUAGAAGCAAAAUAAAUAAUUUUUAUUGUGUUGAAUUUAUGAGUCAUUGUUUGGCUCUU ((((....-)))).....((((((.((((.(------..---(((((((((((.((((((.....)))))).))))...)))))))).)))).)))))).... ( -20.50, z-score = -1.56, R) >droSim1.chr3R 3082309 90 + 27517382 CUGCAUUU-GCAGAGCUC---GAAAAGUGCC------CG---UCGUAGAAGCAAAAUAAAUAAUUUUUAUUGUGUUGAAUUUAUGAGUCAUUGUUUGGCUCUU .(((....-)))((((.(---(((.((((.(------..---(((((((((((.((((((.....)))))).))))...)))))))).)))).)))))))).. ( -21.50, z-score = -1.82, R) >droSec1.super_6 3131966 90 + 4358794 CUGCAUUU-GCAGAGCUCGA-AAAGUGCCC-----------GUCGUAGAAGCAAAAUAAAUAAUUUUUAUUGUGUUGAAUUUAUGAGUCAUUGUUUGGCUCUU .(((....-)))((((.(((-(.((((.(.-----------.(((((((((((.((((((.....)))))).))))...)))))))).)))).)))))))).. ( -21.50, z-score = -1.82, R) >droYak2.chr3R 21533306 90 - 28832112 CUGCAUUU-GCAGAGCUCAA-AAAGUGCCC-----------GUCGUAGAAGCAAAAUAAAUAAUUUUUAUUGUGUUGAAUUUAUGAGUCAUUGUUUGGCUCUU .(((....-)))((((.(((-(.((((.(.-----------.(((((((((((.((((((.....)))))).))))...)))))))).)))).)))))))).. ( -21.80, z-score = -2.08, R) >droEre2.scaffold_4770 3303505 90 + 17746568 CUGCAUUU-GCAGAGUCU---GAAAAGUACC------CC---UCGCAAAAGCAAAAUAAAUAAUUUUUAUUGUGUUGAAUUUAUGAGUCAUUGUUUGGCUCUU .(((.(((-((.(((.((---....))....------.)---))))))).))).((((((.....)))))).............((((((.....)))))).. ( -19.70, z-score = -1.90, R) >droAna3.scaffold_13340 2816722 102 + 23697760 CUGCAUUUUGCAGAGCCCCA-AAAGAGCAUCAAAGUACCAGAGUGUAGCAGAAAAAUAAAUAAUUUUUAUUGUGUUGAAUUUAUGAGUCAUUGUUUGGCUCUU ((((.....)))).......-.((((((..(((.(.((((((((.(((((....((((((.....)))))).))))).)))).)).))).)))....)))))) ( -20.30, z-score = -0.73, R) >consensus CUGCAUUU_GCAGAGCCC_A_AAAAAGCACC______C____UCGUAGAAGCAAAAUAAAUAAUUUUUAUUGUGUUGAAUUUAUGAGUCAUUGUUUGGCUCUU ((((.....))))....................................((((.((((((.....)))))).))))........((((((.....)))))).. (-15.03 = -15.20 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:37 2011