| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,030,791 – 3,030,884 |
| Length | 93 |
| Max. P | 0.652222 |
| Location | 3,030,791 – 3,030,884 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 58.07 |
| Shannon entropy | 0.77766 |
| G+C content | 0.34954 |
| Mean single sequence MFE | -16.09 |
| Consensus MFE | -3.85 |
| Energy contribution | -5.27 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3030791 93 - 27905053 CGUAAUUAAGUAGC--UGUCACUAUUAUCAUUAGAAAUCAUAAUAGACCUUUUCUAAUUCUUAUGAGUUAGGGUAACACCGUUUCGUUGCAGGAA .(((((.(((..(.--(((..(((((((.((.....)).)))))))(((....(((((((....)))))))))).))))..))).)))))..... ( -17.20, z-score = -0.87, R) >droAna3.scaffold_13340 2807043 77 - 23697760 -----UCAAAAGGC-------------UUCCCAAGAAUUUCUUCUUAUUUUAGCCAUUCUGGCCAAGUUAGAGUAUUCAAUUAGCAUCGAAAAUG -----((....(((-------------(....(((((....))))).....))))((((((((...))))))))..............))..... ( -13.50, z-score = -1.38, R) >droEre2.scaffold_4770 3293671 91 - 17746568 CGCAAUUAAGUGGCAGCGGCUCUAUAAUUAUUAGAAA-UAU--UAUGUUUUU-UUAAUUCUCAUGAGUAAGGGUAACUCCGUUUCGUCACGAUCA .........((((((((((.((((.......))))..-...--...(((.((-((.((((....)))).)))).))).)))))..)))))..... ( -16.30, z-score = -0.67, R) >droYak2.chr3R 21524546 93 + 28832112 CGUAAUUAAGUAGCAGUGUCACCUUUAUUUUUAGAAAGCAU--UAUACCCUUAUUAAUUCUCAUAAGUAAGGGAAACACCGUUUCGUCACAUGCA ............((((((.(..((((........))))...--....((((((((..........))))))))............).))).))). ( -16.20, z-score = -1.69, R) >droSec1.super_6 3122960 74 - 4358794 CGUAAUUAAGUGGC--------------------AAAUCAUAAUAUACC-UUAUUAAUUCUUAUCAGUUAGGGUAACACCGUUUCGUCACAGGCA .........(((((--------------------((((.......((((-(((...............))))))).....)))).)))))..... ( -11.56, z-score = -1.29, R) >droSim1.chr3R 3073221 71 - 27517382 CGUAAUUAAGUGGC--------------------AAAUCAUAAUAUACC----CUAAUUCUUAUGAGUUAGGGUAAAACCGUUUCGUCACAGGCA .........(((((--------------------((((.......((((----(((((((....))))))))))).....)))).)))))..... ( -21.80, z-score = -4.67, R) >consensus CGUAAUUAAGUGGC_____________UU_UUAGAAAUCAUAAUAUACCUUU_CUAAUUCUUAUGAGUUAGGGUAACACCGUUUCGUCACAGGCA .........(((((.......................................(((((((....)))))))((.....)).....)))))..... ( -3.85 = -5.27 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:36 2011