| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,022,955 – 3,023,045 |
| Length | 90 |
| Max. P | 0.679337 |
| Location | 3,022,955 – 3,023,045 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 98.22 |
| Shannon entropy | 0.02960 |
| G+C content | 0.27556 |
| Mean single sequence MFE | -11.29 |
| Consensus MFE | -11.53 |
| Energy contribution | -11.29 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.83 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3022955 90 - 27905053 UGCGUUGGGAUAGUUGAGAUAUAAAGCAAACAUAAAAUAAAGAAAAGAAAGAAGUUGAUAGUUUAUAUAUACUCCGUUAAAAUGCAAAUU ((((((..(((....((((((((((((.(((......................)))....)))).))))).))).)))..)))))).... ( -10.85, z-score = -0.80, R) >droSim1.chr3R 3065268 90 - 27517382 UGCGUUGGGAUAGUUGAGAUAUAAAGCAAACAUAAAAUAAAGAAAAGAAAGAAGUUGAUAGUUUAUAUAUACUCCGUUAAAAUGCAAAUU ((((((..(((....((((((((((((.(((......................)))....)))).))))).))).)))..)))))).... ( -10.85, z-score = -0.80, R) >droSec1.super_6 3115023 90 - 4358794 UGCGUUGGGAUAGUUGAGAUAUAAAGCAAACAUAAAAUAAAGAAAAGAAAGAAGUUGAUAGUUUAUAUAUACUCCGUUAAAAUGCAAAUU ((((((..(((....((((((((((((.(((......................)))....)))).))))).))).)))..)))))).... ( -10.85, z-score = -0.80, R) >droYak2.chr3R 21514401 90 + 28832112 UGCGUUGGGAUAGUUGAGAUAUAAAGCAAACAUAAAAUAAAGAAAAGAAAGAAGUUGAUAGUUUAUAUAUACUCCGUCGAAAUGCAAAUA ((((((..(((....((((((((((((.(((......................)))....)))).))))).))).)))..)))))).... ( -11.95, z-score = -0.88, R) >droEre2.scaffold_4770 3285727 90 - 17746568 UGCGUUGGGAUAGUUGAGAUAUAAAGCAAACAUAAAAUAAAGAAAAGAAAGAAGUUGAUAGUUUAUAUAUACUCCGUCGAAAUGCAAAUU ((((((..(((....((((((((((((.(((......................)))....)))).))))).))).)))..)))))).... ( -11.95, z-score = -0.89, R) >consensus UGCGUUGGGAUAGUUGAGAUAUAAAGCAAACAUAAAAUAAAGAAAAGAAAGAAGUUGAUAGUUUAUAUAUACUCCGUUAAAAUGCAAAUU ((((((..(((....((((((((((((.(((......................)))....)))).))))).))).)))..)))))).... (-11.53 = -11.29 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:34 2011