| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,005,829 – 3,005,931 |
| Length | 102 |
| Max. P | 0.884805 |
| Location | 3,005,829 – 3,005,931 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 62.45 |
| Shannon entropy | 0.72943 |
| G+C content | 0.51338 |
| Mean single sequence MFE | -34.67 |
| Consensus MFE | -11.16 |
| Energy contribution | -10.76 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.884805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3005829 102 - 27905053 ------------UUCUUGUGGGCCUUCUCUGG---UUUUUCCGGCUUCUCGAAGAUACCAAGA---CCACCAAUCGACUUGGGUGGCUUGCCAUCCAAGGUUGGAUAGAAGGC-GCCACUU ------------.....(((((((((((.(((---((((...((..((.....))..))))))---)))(((((...(((((((((....))))))))))))))..)))))))-.)))).. ( -44.60, z-score = -4.27, R) >droEre2.scaffold_4770 3268176 102 - 17746568 ------------UUCUUGUGGCCCUUCUCCGG---UUUCUCCGGCUUCUCGAAGAUACCAAGA---CCAGCAAUCGACUUGGGUGGCUUGCCAUCCAAGGUGGGAUAGAAGGC-GCCACUU ------------.....(((((((((((((((---(.(((.(((....))).))).)))....---...........(((((((((....)))))))))...)))..))))).-))))).. ( -43.10, z-score = -3.16, R) >droYak2.chr3R 21497691 102 + 28832112 ------------UUCUUGUGGCCCUUCUCCGG---UUUAUCCGGCUUUUCAAAGAUACCAAGA---CCGCCAAUCGACUUGGGUGGUUUGCCAUCUAAGGUGGGAUAGAAGGC-GCCACUU ------------.....(((((((((((((((---.....))))...................---(((((.......((((((((....)))))))))))))...)))))).-))))).. ( -39.21, z-score = -2.83, R) >droSec1.super_6 3098070 102 - 4358794 ------------UUCUUGUGGCCCUUUUCCGG---UUUUUCCGGCUUCUCGAAAAUACCAAGA---CCACCAAUCGACUUGGGUGGCUUGCCAUCCAAGGUGGGAUAGAAGGC-GGCACUU ------------.....(((.(((((((((((---.....))))...................---(((((.......((((((((....)))))))))))))...)))))).-).))).. ( -34.91, z-score = -1.25, R) >droSim1.chr3R 3048173 102 - 27517382 ------------UUCUUGUGGCCCUUCUCCGG---UUUUUCCGUCUUCUCGAAGAUACCAAGA---CCACCAAUCGACUUGGGUGGCUUGCCAUCCAAGGUGGGAUAGAAGGC-GCCACUU ------------.....(((((((((((..((---((((...(((((....)))))...))))---)).(((.....(((((((((....))))))))).)))...)))))).-))))).. ( -45.20, z-score = -4.62, R) >dp4.chr2 26417171 120 - 30794189 UUCUUGUGCCCUUUUUCAUGGCCCUUCUCAUGGUUUUUCUCUGUCUUCUCAAAGAUGCCCAGGCCUCCACCAGAGGACUUUGGUGGCUUGCCGUCCAAUGUGGGAUAGAAGGC-ACCUGGA .(((.(((((.....((((((......))))))......((((((((..((..((((..((((((...((((((....)))))))))))).))))...)).)))))))).)))-))..))) ( -37.80, z-score = -0.23, R) >droPer1.super_6 1745889 120 - 6141320 UUCUUGUGCCCUUUUUCAUGCCCCUUCUCAUGGUUUUUCUCUGUCUUCUCAAAGAUGCCCAGGCCUCCUCCAGUGGACUUUGGUGGCUUGCCGUCCAAUGUGGGAUAGAAGGC-ACCUGGA .(((.(((((.....(((((........)))))......((((((((..((..((((..((((((....((((......)))).)))))).))))...)).)))))))).)))-))..))) ( -34.80, z-score = -0.06, R) >droAna3.scaffold_13340 2779201 99 - 23697760 ------------UUCUUGUGACCCUUUUCGGG---CUUCUCCGGCUUCUCAAAGAUGCCGAGG---CCACCCAGAGACUUCGGUGGCUUGCCAUCCAAAGUAGGAUAGAAUGC-UCCA--- ------------.................(((---(((((.((((.((.....)).))))(((---(((((..........))))))))...((((......)))))))).))-.)).--- ( -30.00, z-score = -0.33, R) >droWil1.scaffold_181130 16610673 81 - 16660200 ---------------------------------UUUUUGUGAGGUUUCUCAAAGAUUCCGCUGCUGCUGCCA---AUUUUUGGUGGCUUGCCAUCCAGAGUGGGAUAGAAGGC-GCCA--- ---------------------------------.........(((.(((.....((((((((((.((..(((---.....)))..))..)).......))))))))...))).-))).--- ( -24.21, z-score = -0.11, R) >droVir3.scaffold_13047 16855979 85 - 19223366 ---------------------------------UUCUUGUGGAGCUUAUCGUGUUUGUCAAAGACACUCGCGCCCGAUUUGGGCGGCUUGCCAUCCAGCGUGGGAUAAAAGGCAUUUA--- ---------------------------------........((((.....((((((.....))))))...(((((.....)))))))))(((((((......))))....))).....--- ( -26.20, z-score = -0.64, R) >droMoj3.scaffold_6540 20866329 85 + 34148556 ---------------------------------UUCUUGUGGUGUUUGUCAUGUUUCUCAAAGACACCAGCAGCUGUCUUUGGCGGCUUGCCGUCCAGUGUGGGAUAGAAGGCGGCCA--- ---------------------------------....((((((((((..............)))))))).))((((((((((((.....)))((((......)))).)))))))))..--- ( -28.94, z-score = -0.93, R) >droGri2.scaffold_14906 3297267 85 - 14172833 ---------------------------------UUCUUGUGCAAUUUGUCGUGUUUCUCAAAGACGCCGCCACCCAAUUUGGGUGGUUUGCCAUCCAAUGUUGGAUAAAAGGCAUUUA--- ---------------------------------.....((((..((((((((((((.....)))))).......((((((((((((....)))))))).))))))))))..))))...--- ( -27.10, z-score = -2.53, R) >consensus ____________UUCUUGUGGCCCUUCUC_GG___UUUCUCCGGCUUCUCAAAGAUACCAAGG___CCACCAAUCGACUUGGGUGGCUUGCCAUCCAAGGUGGGAUAGAAGGC_GCCA___ .................................................................................(((.((((...((((......))))...)))).))).... (-11.16 = -10.76 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:29 2011