| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,540,930 – 6,541,044 |
| Length | 114 |
| Max. P | 0.577640 |
| Location | 6,540,930 – 6,541,044 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 82.27 |
| Shannon entropy | 0.36525 |
| G+C content | 0.39675 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -16.98 |
| Energy contribution | -17.33 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6540930 114 + 23011544 CACACACACGCUUACGCACAAUUAUUAACACUUAUUAAUGUUGAGGUUUCCAUAUAUA--UGGCACCCCAGGGCUUAAAUUAAAGUCAUCCCGAGUGCCAAACAGCUGCCUCAAGU .........((....)).....((((((......))))))(((((((...........--(((((((....(((((......))))).....).)))))).......))))))).. ( -22.27, z-score = -0.71, R) >droSim1.chr2L 6333025 114 + 22036055 CACACACACGCUUACGCACAAUUAUUAACACUUAUUAAUGUUGAGGUUUCCAUAUAUA--UGGCACCCCAGGGCUUAAAUUAAAGUCAUCCCGAGUGCCAAACAGCUGCCUCAAGU .........((....)).....((((((......))))))(((((((...........--(((((((....(((((......))))).....).)))))).......))))))).. ( -22.27, z-score = -0.71, R) >droSec1.super_3 2080558 114 + 7220098 CACACACACGCUUACGCACAAUUAUUAACACUUAUUAAUGUUGAGGUUUCCAUAUAUA--UGGCACCCCAGGGCUUAAAUUAAAGUCAUCCCGAGUGCCAAACAGCUGCCUCAAGU .........((....)).....((((((......))))))(((((((...........--(((((((....(((((......))))).....).)))))).......))))))).. ( -22.27, z-score = -0.71, R) >droYak2.chr2L 15948404 108 - 22324452 ------CACGCAUACGCACAAUUAUUAACACUUAUUAAUGUUGAGGUUUCGAUAUAGA--UGGCACCCCAGGGCUUAAAUUAAAGUCAUCCCGAGUGCCAAACAGCUGCCUCAAGU ------...((....)).....((((((......))))))(((((((.((......))--(((((((....(((((......))))).....).)))))).......))))))).. ( -23.50, z-score = -0.96, R) >droEre2.scaffold_4929 15448284 108 + 26641161 ------CUCGCAUACGCACAAUUAUUAACACUUAUUAAUGUUGAGGUUUCCAUAUAUA--UGGCACCCCAGGGCUUAAAUUAAAGUCAUCCCGAGUGCCAAACAGCUGCCUCAAGU ------...((....)).....((((((......))))))(((((((...........--(((((((....(((((......))))).....).)))))).......))))))).. ( -22.37, z-score = -0.91, R) >droAna3.scaffold_12916 2647597 109 - 16180835 -----UAGCAUAUACACACAAUUAUUAACACUUAUUAAUGUUGAGGUUUUCGUAUAUA--UGGCACCCCAGGGCUUAAAUUAAAGUCAUCCCGAGUGCCAAACAGCUGGCUCAAGU -----((((((((((.........((((((........)))))).......)))))).--(((((((....(((((......))))).....).))))))....))))........ ( -23.49, z-score = -0.99, R) >dp4.chr4_group1 1607906 102 + 5278887 ------------UAUACACAAUUAUUAACACUUAUUAAUGUUGAGGUUUUUGCGUAUA--UGGCACCCCAGGGCUUAAAUUAAAGUCAUCCCAAGUGCCAAACAGCUGCCUCAAGU ------------..........((((((......))))))(((((((....((.....--((((((.....(((((......))))).......))))))....)).))))))).. ( -24.90, z-score = -1.94, R) >droPer1.super_5 3215381 102 - 6813705 ------------CAUACACAAUUAUUAACACUUAUUAAUGUUGAGGUUUUUGCGUAUA--UGGCACCCCAGGGCUUAAAUUAAAGUCAUCCCAAGUGCCAAACAGCUGCCUCAAGU ------------..........((((((......))))))(((((((....((.....--((((((.....(((((......))))).......))))))....)).))))))).. ( -24.90, z-score = -1.90, R) >droWil1.scaffold_180708 6146255 93 - 12563649 ----------CACAAACACAAUUAUUAACACUUAUUAAUGUUGAGGUUUUUAUAUAUAAAUGGCACCCUAGGGCUUAAAUUAAAGUC-------AUUCCAA---AGUGCCUUA--- ----------...((((.((((.(((((......)))))))))..))))............(((((.....(((((......)))))-------.......---.)))))...--- ( -14.42, z-score = -0.29, R) >droVir3.scaffold_12963 19052247 101 - 20206255 ----------CACACACACAAUUAUUAACACUUAUUAAUGUUGAGGUUUUUAUAUAGA--UGGCACCCCAGGGCCUCAAUUAAAGUC--CAAAAGUGCCAA-CAGCUGCCUCAAGU ----------............((((((......))))))(((((((...........--((((((....((((..........)))--)....)))))).-.....))))))).. ( -20.33, z-score = -0.83, R) >droMoj3.scaffold_6500 4431288 98 - 32352404 ---------CCACACACACAAUUAUUAACACUUAUUAUUGUUGAGGUUUUUAUAUAGA--UGGCACCCCUGGGCCUCAAUUAAAUUC--CAA--GUGCCAA-CAGCUGCUUCAA-- ---------.......(((.....((((((........))))))((..((((....((--.(((.((...)))))))...))))..)--)..--)))....-............-- ( -15.30, z-score = 0.49, R) >droGri2.scaffold_15126 7319792 95 + 8399593 -------------CUACACAAUUAUUAACACUUAUUAAUGUUGAGGUUUUUAUA--GA--UGGCACCCAGGGGCUUCAAUUAAAGCC--CAAA-GUGCCAA-CAGCUGCCUCAAGC -------------.........((((((......))))))(((((((.......--..--((((((....((((((......)))))--)...-)))))).-.....))))))).. ( -28.16, z-score = -2.94, R) >consensus __________CAUACACACAAUUAUUAACACUUAUUAAUGUUGAGGUUUUUAUAUAUA__UGGCACCCCAGGGCUUAAAUUAAAGUCAUCCCGAGUGCCAAACAGCUGCCUCAAGU ........................................(((((((.............((((((.....(((((......))))).......)))))).......))))))).. (-16.98 = -17.33 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:34 2011