| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,980,960 – 2,981,026 |
| Length | 66 |
| Max. P | 0.962797 |
| Location | 2,980,960 – 2,981,026 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Shannon entropy | 0.29964 |
| G+C content | 0.35455 |
| Mean single sequence MFE | -16.60 |
| Consensus MFE | -11.84 |
| Energy contribution | -11.04 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2980960 66 - 27905053 AAGGGUUCGAAGAUUUUAUUGUCAGAGUAAUGAUUUUGAAUUAAUAUAAUUUGCGCGCCCAUUUGG ..((((.((.(((((.((((((((((((....)))))))..))))).))))).)).))))...... ( -17.50, z-score = -3.03, R) >droSim1.chr3R 3020976 66 - 27517382 AAGGGUUUGCGGAUUUUAUUGUCAGAGUAAUGAUUUUGAAUCAAUUUAAUUUGCGCGCCCAUUUGG ..((((.((((((((..(((((((((((....)))))))..))))..)))))))).))))...... ( -22.40, z-score = -4.11, R) >droSec1.super_6 3073374 66 - 4358794 AAGCGCUUCCGGAUUUUAUUGUCAGAGUAACGAUUUUGAAUCAAUUUAAUUUGCGCGCCCAUUUGG ..((((...((((((..(((((((((((....)))))))..))))..)))))).))))........ ( -15.80, z-score = -1.62, R) >droYak2.chr3R 21461115 66 + 28832112 AAGGGUUUACAGAUUGUAGUGUCGAAAAAUAGAUUUCGAAUAAAUUUAAUUUACGCGCCCAUUUGG ..((((....((((((.(((.((((((......))))))....)))))))))....))))...... ( -13.10, z-score = -1.51, R) >droEre2.scaffold_4770 3243625 66 - 17746568 UAGGGCUUACAGAUUUUACUGUCGGUGUAAUGAUUUUGAAUAAGUUUAAUUUACGCGCCUAUUUGG ..((((..((((......))))..((((((.(((((.....)))))....))))))))))...... ( -14.20, z-score = -1.69, R) >consensus AAGGGUUUACAGAUUUUAUUGUCAGAGUAAUGAUUUUGAAUAAAUUUAAUUUGCGCGCCCAUUUGG ..((((....(((((..(((.(((((((....)))))))...)))..)))))....))))...... (-11.84 = -11.04 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:27 2011