| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,929,071 – 2,929,143 |
| Length | 72 |
| Max. P | 0.898382 |
| Location | 2,929,071 – 2,929,143 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 69.30 |
| Shannon entropy | 0.57523 |
| G+C content | 0.35480 |
| Mean single sequence MFE | -14.77 |
| Consensus MFE | -6.12 |
| Energy contribution | -6.47 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2929071 72 - 27905053 --------CGUAUAAAUAUACAUAUAGUAUAUAAUUCAGCUGCAUAUGGCAGCAUAUGUCGAGGCAAAACCACAAAAGUA --------(((((..((((((.....))))))......(((((.....))))))))))....((.....))......... ( -14.50, z-score = -1.74, R) >droSim1.chr3R 2968131 72 - 27517382 --------CGUAUAAAUAUACAUAUAGUAUAUAAUUGAGCUGCAUAUGGCAGCAUAUGUCGAGCCAAAACCACAAAAGUA --------.((....((((((.....))))))..(((.((((((((((....)))))))..))))))....))....... ( -14.30, z-score = -1.48, R) >droSec1.super_6 3018771 72 - 4358794 --------CGUUUAUAUAUACAUAUAGUAUAUAAUUGAGCUGCAUAUGGCACAAUAUGUCGAGCCAAAACCACAAAAGUA --------......(((((((.....))))))).(((.(((((((((......))))))..))))))............. ( -13.70, z-score = -1.39, R) >droYak2.chr3R 21398164 72 + 28832112 --------CAUAUUAAUAUACAUAUAGUACAUAAUUGAGCUGCAUGUGGCAACAUAUGUCGAGGCAAAACCACAAAAACA --------..............................((((((((((....)))))))...)))............... ( -12.70, z-score = -1.06, R) >droEre2.scaffold_4770 3189683 72 - 17746568 --------CGUAUAAAUAUACAUAUAGUAUAUAAUUAAGCUGCAUAUGGCAGCAUAUGUCGAGGCAAAACCACAAAAAUA --------(((((..((((((.....))))))......(((((.....))))))))))....((.....))......... ( -14.50, z-score = -1.93, R) >droMoj3.scaffold_6540 20787844 71 + 34148556 ------CUCACACAUACACACUCACACAGAUGUGUAUCGCUGCAUCUGGCAGCAUAUGGGGAAACCACAAAAUAACA--- ------.......(((((((.((.....))))))))).(((((.....)))))...((((....)).))........--- ( -20.60, z-score = -4.06, R) >droGri2.scaffold_14906 3207185 76 - 14172833 UGCAUAAAUACACACACAUACAUACAGACAGACAAAUCGUUGCAUCUGGCAGCAUAU-GGGAAACCACAGAAUGGAA--- ....................(((.(.............(((((.....)))))...(-((....)))..).)))...--- ( -13.10, z-score = -1.57, R) >consensus ________CGUAUAAAUAUACAUAUAGUAUAUAAUUGAGCUGCAUAUGGCAGCAUAUGUCGAGGCAAAACCACAAAAGUA ......................................(((((.....)))))........................... ( -6.12 = -6.47 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:23 2011