| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,921,502 – 2,921,595 |
| Length | 93 |
| Max. P | 0.758459 |
| Location | 2,921,502 – 2,921,595 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 71.07 |
| Shannon entropy | 0.61260 |
| G+C content | 0.45969 |
| Mean single sequence MFE | -26.65 |
| Consensus MFE | -13.88 |
| Energy contribution | -13.69 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758459 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2921502 93 + 27905053 GACUUGCUCACUGUGCGACUUUCAGCUAGUUUUGGCGAGGUUAUCGUCGCGCCUUAGUUGGGACUGAAAGUAAAAAGUC-AAGGAUGAGUAAGG--------------- ..((((((((((.(((.(((((((((((..(..((((.((......)).))))..)..)))..)))))))).....).)-).)).)))))))).--------------- ( -31.40, z-score = -2.33, R) >droYak2.chr3R 21390685 104 - 28832112 GACUUGCUCACUGUGCGACUUUCAGCUGGUUUUGGCGAGGUUAUCGUCGCGCCUUAGUUGGGACUGAAAGUAGAAAGGUCAUGGAUGAGUAAGACAUUCACAGG----- ..(((((((((((((...(((((.((((((((..(((((((.........))))).))..)))))...))).)))))..))))).))))))))...........----- ( -34.80, z-score = -1.91, R) >droEre2.scaffold_4770 3182021 103 + 17746568 GACUUGCUCACUGUACGACUUUCAGCUAGUUUUGGCGAGGUUAUCGUCGCGCCUUAGUUGGGACUGAAAGUAAAAAGUC-ACGAAUGAGUAAGGUUUUCACAGG----- ..((((((((.(((((.(((((((((((..(..((((.((......)).))))..)..)))..)))))))).....)).-)))..))))))))...........----- ( -30.40, z-score = -1.39, R) >droSec1.super_6 3011188 94 + 4358794 GACUGGCUCACUGUGCGACUUUCAGCUAGUUUUGGCGAGGUUAUCGUCGCGCCUUAGUUGGGACUGAAAGUAAAAAGUCCACGGAUGAGUAAGG--------------- ..((.((((((((((.((((((..((((((((..(((((((.........))))).))..)))))...)))..))))))))))).))))).)).--------------- ( -35.60, z-score = -3.04, R) >droSim1.chr3R 2961148 93 + 27517382 GACUUGCUCACUGUGCGACUUUCAGCUAGUUUUGGCGAGGUUAUCGUCGCGCCUUAGUUGGGACUGAAAGUAAAAAGUC-ACGGAUGAGUAAGG--------------- ..((((((((((((((.(((((((((((..(..((((.((......)).))))..)..)))..)))))))).....).)-)))).)))))))).--------------- ( -36.70, z-score = -3.84, R) >droAna3.scaffold_13340 2699905 105 + 23697760 ---UUGCUCACGGUACGACUUUCAGCUGGUUUUGGCGAGGUUAUCGUCGCGCCUUAGUUGGGACUGCAAGGACAAU-ACCAUACAUUAUUUAUUUACUUUCGAAGAAGG ---........((((....(..((((((((..((((((.....)))))).)))..)))))..)((....))....)-)))................(((((...))))) ( -19.60, z-score = 1.15, R) >dp4.chr2 26332552 97 + 30794189 CAUUUGCUCACGGUAUGACUUUCAGCUGGUUUUGGCGAGGUUAUCGUCGCGCCUUAGCUGGGACUGCAAAACAGAGAAACACCCAAAUAUGAGUUGC------------ .....(((((.(((.....(..((((((((..((((((.....)))))).)))..)))))..)(((.....)))......)))......)))))...------------ ( -24.00, z-score = 0.25, R) >droPer1.super_6 1662412 97 + 6141320 CAUUUGCUCACGGUAUGACUUUCAGCUGGUUUUGGCGAGGUUAUCGUCGCGCCUUAGCUGGGACUGCAAAACAGAGAAACACCCAAAUAUGAGUUGC------------ .....(((((.(((.....(..((((((((..((((((.....)))))).)))..)))))..)(((.....)))......)))......)))))...------------ ( -24.00, z-score = 0.25, R) >droWil1.scaffold_181089 7356275 93 - 12369635 CCUUUUAUCACUAUUUGAAUUUCAGCUAGUUUUUGCUAAGUUAUCGUCGCGCCUUAGUUGGGACUGAAAUUAUAUAAUAAUUAGUGGAACAGG---------------- (((.((.((((((.(((((((((((((.......((((((............))))))..)).))))))))......))).)))))))).)))---------------- ( -17.40, z-score = -0.54, R) >droVir3.scaffold_13047 16770340 89 + 19223366 ----UGCUCCCGACAUGACUUUCAGCUAGAUUUGGCGAGGUUAUCGUCGCGCCUUAGUUGGGGCUGUAACAGA----ACAACA-CAUGUUGAUUAACA----------- ----......(((((((.....(((((((...((((((.....))))))....)))))))(..(((...))).----.)....-))))))).......----------- ( -22.90, z-score = -0.48, R) >droMoj3.scaffold_6540 20781121 98 - 34148556 CUCAUGCUCACGAUAUGACUUUCAGCUAGAUUUGGCGAGGUUAUCGUCGCGCCUUUGUUGGGACUGUAAUAGAGAUGACAACAGUAUGUUAGUUAAUA----------- ..((((((..((((((((((((..((((....)))))))))))).))))((.((((((((......)))))))).)).....))))))..........----------- ( -20.90, z-score = 0.62, R) >droGri2.scaffold_14906 3197586 91 + 14172833 ----UGCUCGCGAUAUGACUUUCAGCUAGUUUUGGCGAGGUUAUCGUCGCGCCUUAGUUGGGACUAGAAGCACAA---ACAGAAAGUGUUGAUUAACG----------- ----....((((((((((((((..((((....)))))))))))).))))))..(((((..(.(((..........---......))).)..)))))..----------- ( -22.09, z-score = 0.22, R) >consensus GACUUGCUCACGGUACGACUUUCAGCUAGUUUUGGCGAGGUUAUCGUCGCGCCUUAGUUGGGACUGAAAGUAAAAAGACCACAGAUGAGUAAGU_AC____________ ...................(..(((((((...((((((.....))))))....)))))))..).............................................. (-13.88 = -13.69 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:22 2011