| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,912,324 – 2,912,418 |
| Length | 94 |
| Max. P | 0.734907 |
| Location | 2,912,324 – 2,912,418 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.23 |
| Shannon entropy | 0.56971 |
| G+C content | 0.42965 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -11.88 |
| Energy contribution | -11.61 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2912324 94 + 27905053 -----AUUCGUUU-UACGUUUGUCAA-GCCUCAUAGCCGGCA-GUUCGAACGUAU--ACGCUCUCUGAGUCAGACCUCGAAAUCGUAGCUCUACACAAUUCUGU---------------- -----...(((..-((((((((....-(((........))).-...)))))))).--))).....((.((.(((.((((....)).)).))))).)).......---------------- ( -19.80, z-score = -0.57, R) >droEre2.scaffold_4770 3172644 94 + 17746568 -----AUCCGUUU-UACGUUUGUCAA-GCCUCAUAGCCGGCA-GUCCGAACGUAU--ACGCUCUCUGAGUCAGACCUCGAAAUCGUAGCUCUACACAUUUCUGU---------------- -----...(((..-((((((((....-(((........))).-...)))))))).--)))......(((......)))(((((.(((....)))..)))))...---------------- ( -19.20, z-score = -0.53, R) >droYak2.chr3R_random 744676 94 + 3277457 -----AUCCGUUU-UACGUUUGUCAA-GCCUCAUAGCCGGCA-GUUCGAACGUAU--ACGCUCUCUGAGUCAGACCUCGAAAUCGUAGCUCUACACAUUUCUGU---------------- -----...(((..-((((((((....-(((........))).-...)))))))).--)))......(((......)))(((((.(((....)))..)))))...---------------- ( -19.90, z-score = -0.71, R) >droSec1.super_6 3003187 94 + 4358794 -----AUUCGUUU-UACGUUUGUCAA-GCCUCAUAGCCGGCA-GUUCGAACGUAU--ACGCUCUCUGAGUCAGACCUCGAAAUCGUAGCUCUACACAAUUCUGU---------------- -----...(((..-((((((((....-(((........))).-...)))))))).--))).....((.((.(((.((((....)).)).))))).)).......---------------- ( -19.80, z-score = -0.57, R) >droSim1.chr3R 2951867 94 + 27517382 -----AUUCGUUU-UACGUUUGUCAA-GCCUCAUAGCCGGCA-GUUCGAACGUAU--ACGCUCUCUGAGUCAGACCUCGAAAUCGUAGCUCUACACAAUUCUGU---------------- -----...(((..-((((((((....-(((........))).-...)))))))).--))).....((.((.(((.((((....)).)).))))).)).......---------------- ( -19.80, z-score = -0.57, R) >dp4.chr2 26326584 84 + 30794189 ---UUCAAUCGUU-UAUGUUUGUGAA-GCCUCAUAACCGGCA-GUUCGAACGUAG---CGUUUUCCAAGUCAGUACUA-AAUCACUAGUUUUGU-------------------------- ---......((((-.(((((((....-(((........))).-...)))))))))---))..........(((.((((-......)))).))).-------------------------- ( -15.60, z-score = -1.15, R) >droPer1.super_6 1656436 84 + 6141320 ---UUCAAUCGUU-UAUGUUUGUGAA-GCCUCAUAACCGGCA-GUUCGAACGUAG---CGUUUUCCAAGUCAGUACUA-AAUCACUAGUUUUGU-------------------------- ---......((((-.(((((((....-(((........))).-...)))))))))---))..........(((.((((-......)))).))).-------------------------- ( -15.60, z-score = -1.15, R) >droWil1.scaffold_181130 117974 116 - 16660200 AUUUCGAUUUGUACUACGUUUGUGAAAGCCUCAUAGCCGGCACAAUUGAACGCAG--ACACAAGCCGAUAUAGACGUU--UUUAACUGCUCUAAAAAAAAAUAAUUGUGAAUAUUUUUAU ...(((..((((.....(((((((...(((........))).(....)..)))))--))))))..)))..((((.((.--.......))))))...(((((((........))))))).. ( -18.30, z-score = 0.11, R) >droAna3.scaffold_13340 2693774 89 + 23697760 -------AUUACC-UACGUUUGUCAA-GCCUCAUAGCCGGCA-AUUCGAACGUAUU--CGCUCUCCGAGUCAGACCUAAAAUCA---GCUCUACACAUUUUUGU---------------- -------......-((((((((....-(((........))).-...)))))))).(--((.....)))((.(((.((......)---).)))))..........---------------- ( -15.20, z-score = -1.07, R) >droVir3.scaffold_13047 16761960 87 + 19223366 -----------UA-UACGUUUGUGAA-GCCUCAUAGCCGGUA-AUUCGAACGUAG--AUUCUCUCCGAGAUAGACCUG-AAGCAGUUGCUCUACAGAUUUCUGU---------------- -----------..-((((((((....-(((........))).-...)))))))).--..((((...))))((((.(((-.(((....)))...)))...)))).---------------- ( -18.10, z-score = 0.06, R) >droMoj3.scaffold_6540 20771622 89 - 34148556 -----------UA-UACGUUUGUGAA-GCCUCAUAGCCGGUA-AUUCGAACGUAGUAAUUCUUUCCGAGACAGACCUC-AAACAGUUGCUCUACAGAUUUCUAU---------------- -----------..-((((((((....-(((........))).-...))))))))((((((.(((..(((......)))-))).))))))...............---------------- ( -16.80, z-score = -0.63, R) >droGri2.scaffold_14906 3190710 85 + 14172833 -----------UA-UACGUUUGUGAA-GCCUCAUAGCCGGCA-AGUCGAACGUAG----ACUUUCUCAGAUUCACCUC-AAACAGUUGCUCUACAGAUUUCUGU---------------- -----------..-...(((((((((-(((........)))(-((((.......)----)))).......)))))...-)))).........((((....))))---------------- ( -16.70, z-score = -0.25, R) >consensus _____AUUCGUUU_UACGUUUGUCAA_GCCUCAUAGCCGGCA_GUUCGAACGUAG__ACGCUCUCCGAGUCAGACCUC_AAACAGUAGCUCUACACAUUUCUGU________________ ..............((((((((.....(((........))).....)))))))).................................................................. (-11.88 = -11.61 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:21 2011