| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,900,459 – 2,900,583 |
| Length | 124 |
| Max. P | 0.525019 |
| Location | 2,900,459 – 2,900,583 |
|---|---|
| Length | 124 |
| Sequences | 5 |
| Columns | 125 |
| Reading direction | reverse |
| Mean pairwise identity | 78.49 |
| Shannon entropy | 0.38460 |
| G+C content | 0.44479 |
| Mean single sequence MFE | -34.94 |
| Consensus MFE | -22.70 |
| Energy contribution | -23.14 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2900459 124 - 27905053 UGUAAAGUGACCGGAGCAGAGUAUUGGAAUUA-ACCGAAAAUCUGUCUUCUGUUCGUAGGGGAAGCUUUUCUAGUCUGGUCCCAUUUGAUAUAACAGCAGUGUAUCCUGGCACUGUUAAGUGUCG ......(.((((((((((((...((((.....-.))))...)))))(((((.(.....).))))).........))))))).)....(((((...((((((((......))))))))..))))). ( -36.40, z-score = -1.95, R) >droSim1.chr3R 2940983 123 - 27517382 UGUGAAGUGACCGGAGCAGAGUAUUGGAAUUA-CCCGAAAAUCUGUCUCCUGUUCGUAGGGGAAGCUUUUCAAGUCUGGUCUCAUUUGAUUUAACAGCAGCGUAU-CGGACACUGUUAAGUAUUG ......(.(((((((.((((...((((.....-.))))...))))(((((((....)))))))...........))))))).).....(((((((((...(....-..)...))))))))).... ( -34.20, z-score = -1.07, R) >droSec1.super_6 2990885 123 - 4358794 UGUAAAGUGACCGGAGCAGAGUAUUGGAAUUA-CCCGAAAAUCUGUCUUCAGUUCGUAGGGGAAGCUUUUCAACUCUGGUCCCAUUUUAUUUAACAGCAGUGUGU-CGGGCACUGUUAAGUAUUG .((((((((...(((.((((((..(((((...-(((......(((....)))......)))......))))))))))).))))))))))).....((((((((..-...))))))))........ ( -37.10, z-score = -2.29, R) >droYak2.chr3R_random 736481 124 - 3277457 UGUAGAGCGACCGCGGUAGAGUAUUGGGAUUAUACCAAAAAUCUGCGCUCCGUUCGUAGGGGAAGACUUUUAUGUCUGGUCACAUUCAAUUUUACAGCAUCGUAU-CCGGCUCUGUUAAGUUUCU ..((((((((((...(((((...((((.......))))...))))).((((.......)))).((((......))))))))...........(((......))).-...)))))).......... ( -33.40, z-score = -0.88, R) >droEre2.scaffold_4770 3161758 120 - 17746568 UGCUGAGUGACCGGAGCAGACUAUUGCGAUUAUACCGAGCAUCUGCGUUACGCUCGUAGGGAAAG-CUUGCAAGUCUGGUCACAUUCCGUUUUACAGUAUCCUAG---GGCUCUGUUAAUAUUG- ......(((((((((((((....))))........(((((.((((((.......))))))....)-))))....))))))))).....(((..((((..((....---))..)))).)))....- ( -33.60, z-score = -0.30, R) >consensus UGUAAAGUGACCGGAGCAGAGUAUUGGAAUUA_ACCGAAAAUCUGUCUUCCGUUCGUAGGGGAAGCUUUUCAAGUCUGGUCACAUUUGAUUUAACAGCAGCGUAU_CGGGCACUGUUAAGUAUCG ......(.((((((((((((...((((.......))))...))))).((((.......))))............))))))).).....(((((((((...............))))))))).... (-22.70 = -23.14 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:20 2011