| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,882,253 – 2,882,360 |
| Length | 107 |
| Max. P | 0.867246 |
| Location | 2,882,253 – 2,882,360 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 75.25 |
| Shannon entropy | 0.43365 |
| G+C content | 0.45682 |
| Mean single sequence MFE | -30.99 |
| Consensus MFE | -15.82 |
| Energy contribution | -16.06 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.52 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2882253 107 - 27905053 ------GAUAUG---UCCUUUUUUAUCCGAUGGCGAUGAAAGCAUUGCUAGAACUUCCUCUUGACUGCUUUUAGUUGCUGACGACAAUUCUGGUAGUGUCCACCAAGCACCUGGAU ------......---.........(((((...((.......((((((((((((..((.((..(((((....)))))...)).))...)))))))))))).......))...))))) ( -24.74, z-score = -0.83, R) >droSim1.chr3R 2925114 107 - 27517382 ------GAUUUG---UCCUUUUUUACCCGAUGGCGAUGAUAGCAUUGCUAGAACUUCCGCUUGACUGCUUUUAGUUGCUGACGACAGUUCCUGUAGUGUCCACCAAGCACCUGGAU ------.....(---(((............((((((((....))))))))........(((((((.(((..(((..((((....))))..))).))))))....))))....)))) ( -25.80, z-score = -1.28, R) >droSec1.super_6 2972659 107 - 4358794 ------GAUUUG---UCCUUUUUUGUCCGAUGGCGAUGAUAGCAUUGCUAGAACUUCCGCUUGACUGCUUUUAGUUGCUGACGACAGUUCUUGUAGUGUCCACCAAGCACCUGGAU ------......---.........(((((.((((((((....))))))))........((((((((((....((..((((....)))).)).)))))......)))))...))))) ( -25.80, z-score = -0.68, R) >droYak2.chr3R 21341770 110 + 28832112 ------GAUUUGUCCUCCUUUUUUAUCCGAUGUCAAUGAGAGCAUUGCUAGAACUUCCGUUUGACUGCUUUUAGUUGCUGCAGACAGUUCUGGCAGUGUCCACCAAGAUCCUGGAU ------..................(((((..(((...(.(..(((((((((((((...(((((...((........))..))))))))))))))))))..).)...)))..))))) ( -33.20, z-score = -2.72, R) >droAna3.scaffold_13340 18515219 116 + 23697760 GAUUUUGGUGGUUUUAUUUUUAUUGCUUGAGUCCGAGGCCAAUAUGGCCCGGACUUCAGCCUGACUGGUUUUGGUCGCUUUUGAGAGAUCCUCUAGAGUCCACCAACGAUCCUGUC (((((((((((.............(((.(((((((.((((.....))))))))))).)))..((((......))))(((((.(((.....))).)))))))))))).))))..... ( -45.40, z-score = -4.71, R) >consensus ______GAUUUG___UCCUUUUUUAUCCGAUGGCGAUGAUAGCAUUGCUAGAACUUCCGCUUGACUGCUUUUAGUUGCUGACGACAGUUCUUGUAGUGUCCACCAAGCACCUGGAU ........................(((((...((.......(((((((.((((((((.((..(((((....)))))...)).)).)))))).))))))).......))...))))) (-15.82 = -16.06 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:17 2011