| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,853,169 – 2,853,278 |
| Length | 109 |
| Max. P | 0.971911 |
| Location | 2,853,169 – 2,853,278 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.74 |
| Shannon entropy | 0.36010 |
| G+C content | 0.53800 |
| Mean single sequence MFE | -22.51 |
| Consensus MFE | -13.44 |
| Energy contribution | -14.04 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.971911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2853169 109 + 27905053 AUUUCAUCCCCCUACUCCAACCAUCCCUCCUCCAUCCAGCGGUGGCUCAUCUUCAGCUCACCGUUGCUCACUCGGCGUCUUUGCCGACUUGCGUUCGCACUUAAAAAUU ....................................(((((((((((.......))).)))))))).....((((((....))))))..(((....))).......... ( -25.70, z-score = -4.29, R) >droSim1.chr3R 2893166 109 + 27517382 AUUUCAUACCCCUCCUCCAACCAUCCACCCUCCAUCCGUCGGUGGCUCAUCUUCAGCUCACCGCUGCUCACUCGGCGUCUUCGUCGACUUGCGUUCGCACUUAAAAAUU ........................(((((..(.....)..)))))........((((.....)))).....((((((....))))))..(((....))).......... ( -20.00, z-score = -2.32, R) >droSec1.super_6 2943870 109 + 4358794 AUUUCAUACCCCUCCUGCAACCUACCACCCUCCAUCCGUCGGUGGCUCAUCUUCAGCUCACCGCUGCUCACUCGGCGUCUUCGUCGACUUGCGUUCGCACUUAAAAAUU ...............((((((................(.((((((((.......))).)))))).((....((((((....))))))...))))).))).......... ( -23.30, z-score = -2.84, R) >droYak2.chr3R 21286232 104 - 28832112 AUUUCAGCGCCCUCCUCCAUGCAACCCCCUUC-----AUCGGUGGUUCAUCUUAAGCUCGCCGCUGUUCAGUCGCCGUCUUCGCCGACUUGCGUUCGCACUUAAAAAUU ....((((((........(((.((((.((...-----...)).))))))).........).)))))...(((((.((....)).)))))(((....))).......... ( -22.03, z-score = -1.48, R) >droAna3.scaffold_13340 18485982 95 - 23697760 AUUUCG-CGCCCUCCUCGGGCCACCCCUAUUCC----UUUGGUGGCUCAUCUUCUGCUCACCGUAGCUCACUCGACGUCUU---------GUGCUCGCACUUAAAAAUU .....(-(((...(.((((((((((........----...)))))))).....((((.....)))).......)).)....---------))))............... ( -21.50, z-score = -1.82, R) >consensus AUUUCAUCCCCCUCCUCCAACCAACCCCCCUCCAUCCAUCGGUGGCUCAUCUUCAGCUCACCGCUGCUCACUCGGCGUCUUCGCCGACUUGCGUUCGCACUUAAAAAUU .......................................((((((((.......))).)))))..((....((((((....))))))...))................. (-13.44 = -14.04 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:14 2011