| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,817,267 – 2,817,362 |
| Length | 95 |
| Max. P | 0.636916 |
| Location | 2,817,267 – 2,817,362 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 55.94 |
| Shannon entropy | 0.91261 |
| G+C content | 0.36474 |
| Mean single sequence MFE | -20.27 |
| Consensus MFE | -6.89 |
| Energy contribution | -7.43 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.83 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.636916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2817267 95 + 27905053 UGGGCAAUUUCUA-AGUGUAAAAUGUGAUUUUAGUAAGAAAUGAAAGUUUCUGGAAUGCCCAAAUUUUUGGGCAUCUGGUCUCGAUCAAUUUUUGU .............-....(((((..(((((......((((((....))))))(((.(((((((....))))))))))......)))))..))))). ( -21.40, z-score = -1.43, R) >droSim1.chr3R 2857304 95 + 27517382 UUGGCGAUUUCUC-AGUGUAAAAUGCGACUUUAGUAAGGAAUGAAAGAUUCUGGGGUGCCCAAAUUUUUGGGCAUCUGGUCUCGAUCAAUUUUGGU (((((((......-.((((...))))((((.......(((((.....))))).((((((((((....))))))))))))))))).))))....... ( -23.90, z-score = -0.74, R) >droSec1.super_6 2908238 95 + 4358794 UUGGCAAUUUCUC-AGUGUAAAAUGCGACUUUAGUAAGGAAUGAAAGAUUCUGGGGUGCCCAAAUUUUUGGGCAUCUGGUCUCGAUCAAUUUUGGU ...(((.((((..-...).))).)))((((.......(((((.....))))).((((((((((....))))))))))))))((((......)))). ( -23.30, z-score = -0.74, R) >droYak2.chr3R_random 693770 95 + 3277457 UUCGAACUUUUUC-AGUGUAAAAUUUGAUUUUGGUAAGAAAUGAAAAUGUCUGGAAUGGCCAAAUUUUUGGGCAUCUGGUUUCGAUCAAUUUCUGU .....(((...((-((........))))....))).((((((((......(..((.((.((((....)))).))))..)......)).)))))).. ( -17.70, z-score = -0.08, R) >droEre2.scaffold_4770 3069592 95 + 17746568 UUAUCAUUUUUUUUAGUGUAAGAUAUGGUUUAAGUAAGAAAUGAAAAUGCCUGGAAUGCCCAAAUUUUUGGGCAUCUGGCUUUGAUCAAUUUUUU- ...(((((((((......((((......))))...)))))))))....(((.(((.(((((((....)))))))))))))...............- ( -22.10, z-score = -1.58, R) >droPer1.super_3 5107368 84 - 7375914 -UUGGAAUAGUUCUAGUAUUCCCUAUAG----GGUAUGUGGUGGUAUUUCCAUUGGUUUUUGGCUACCUGCAUGCAUAAUUAUGGCAUC------- -..((((((.......))))))((((((----.((((((((((((....((...))......)))))).))))))....))))))....------- ( -22.20, z-score = -0.90, R) >droGri2.scaffold_14906 2942709 74 - 14172833 -----------------GCGAAUUCGAAGCUGAUUCCCAGUUGAGCUGCCUCUUUGCAUUCACAUCUUU-----UUUGGCUUUCAUAUUUUUUUUC -----------------..((((..(((((..(........((((.(((......))))))).......-----.)..)))))...))))...... ( -11.29, z-score = -0.13, R) >consensus UUGGCAAUUUCUC_AGUGUAAAAUGUGAUUUUAGUAAGAAAUGAAAGUUUCUGGAGUGCCCAAAUUUUUGGGCAUCUGGUUUCGAUCAAUUUUUGU ..................................................((((.((((((((....))))))))))))................. ( -6.89 = -7.43 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:07 2011