| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,813,972 – 2,814,062 |
| Length | 90 |
| Max. P | 0.948627 |
| Location | 2,813,972 – 2,814,062 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 98.44 |
| Shannon entropy | 0.02683 |
| G+C content | 0.42889 |
| Mean single sequence MFE | -21.78 |
| Consensus MFE | -21.22 |
| Energy contribution | -21.26 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2813972 90 + 27905053 AUUGCGUCACAAAAGGUAUAAACGCCGAGGGCACGGAACAAAAUCCUCGAAAAAGUGAAGUAUAUUUGGUGAAGUAAAGACGACAGUCAC .((((.((((...(((((((..(((((((((............)))))).....)))...))))))).)))).)))).(((....))).. ( -21.80, z-score = -2.23, R) >droSim1.chr3R 2853752 90 + 27517382 AUUGCGUCACAAAAGGUAUAAACGCCGAGGGCACGGAACAAAAUCCUCGAAAAAGUGAAGUAUAUUUGGUGAAGUAAAGACGACAGUCAC .((((.((((...(((((((..(((((((((............)))))).....)))...))))))).)))).)))).(((....))).. ( -21.80, z-score = -2.23, R) >droSec1.super_6 2904997 90 + 4358794 AUUGCGUCACAAAAGGUAUAAACGCCGAGGGCACGGAACAAAAUCCUCGAAAAAGUGAAGUAUAUUUGGUGAAGUAAAGACGACAGUCAC .((((.((((...(((((((..(((((((((............)))))).....)))...))))))).)))).)))).(((....))).. ( -21.80, z-score = -2.23, R) >droYak2.chr3R_random 691195 90 + 3277457 AUUGCGUCACAAAAGGUAUAAACGCCGAGGGCACGGAACCAAAUCCUCGAAAAAGUGAAGUAUAUUUGGUGAAGUAAAGACGACAGUCAC .((((.((((...(((((((..(((((((((...(....)...)))))).....)))...))))))).)))).)))).(((....))).. ( -23.00, z-score = -2.32, R) >droEre2.scaffold_4770 3065604 90 + 17746568 AUUGCGUCACAAAAGGUAUGAACGCCGAGGGCACGGAACCAAAUCCUCGAAAAAGUGAAGUAUAUUUGGUGUAGUAAAGACGACAGUCAC .((((..(((...(((((((..(((((((((...(....)...)))))).....)))...))))))).)))..)))).(((....))).. ( -20.50, z-score = -0.94, R) >consensus AUUGCGUCACAAAAGGUAUAAACGCCGAGGGCACGGAACAAAAUCCUCGAAAAAGUGAAGUAUAUUUGGUGAAGUAAAGACGACAGUCAC .((((.((((...(((((((..(((((((((............)))))).....)))...))))))).)))).)))).(((....))).. (-21.22 = -21.26 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:06 2011