| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,804,490 – 2,804,568 |
| Length | 78 |
| Max. P | 0.628330 |
| Location | 2,804,490 – 2,804,568 |
|---|---|
| Length | 78 |
| Sequences | 8 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 71.84 |
| Shannon entropy | 0.51665 |
| G+C content | 0.30926 |
| Mean single sequence MFE | -9.54 |
| Consensus MFE | -8.40 |
| Energy contribution | -7.81 |
| Covariance contribution | -0.59 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.22 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.628330 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 2804490 78 - 27905053 -------------AAUAUGUUU-----AACUAUA-AUAUUUCACAUUUUCACCCAAUUCCAUUCAAGUAUGGGAAAAGUUCCAAUUUAACUCGGUGU -------------.........-----.......-..............((((...((((((......))))))..((((.......)))).)))). ( -9.30, z-score = -0.14, R) >droAna3.scaffold_13340 18439251 97 + 23697760 UAUAUUUUCUAUUAAUAUUUUUCCUACAACUACAUAUAUUUCACAUUUUCACCCAAUUCCAUUCAAGUAUGGGAAAAGUUCCAAUUUAACACGGUGU .................................................((((...((((((......))))))...(((.......)))..)))). ( -9.20, z-score = -0.33, R) >droEre2.scaffold_4770 3055936 78 - 17746568 -------------AAUAUGCUC-----AACUGCC-AUAUUUAACAUUUUCACCCAAUUCCAUUCAAGUAUGGGAAAAGUUCCAAUUUAACACGGUGC -------------(((((((..-----....).)-))))).........((((...((((((......))))))...(((.......)))..)))). ( -11.30, z-score = -0.52, R) >droYak2.chr3R_random 681647 61 - 3277457 ------------------------------------UAUGUAGCAUUUUUACCCAAUUCCAUUCAAGCAUGGGAAAAGUUCCAAUUUAACACGGUGU ------------------------------------.............((((...((((((......))))))...(((.......)))..)))). ( -7.00, z-score = 0.60, R) >droSec1.super_6 2895525 78 - 4358794 -------------AAAAUGUUU-----AACUACA-AUAUUUCACAUUUUCACCCAAUUCCAUUCAAGUAUGGGAAAAGUUCCAAUUUAACGCGGUGU -------------(((((((..-----((.....-...))..)))))))(((((..((((((......))))))...(((.......)))).)))). ( -10.80, z-score = -0.60, R) >droSim1.chr3R 2844111 78 - 27517382 -------------AAUACGUUU-----AACUACA-AUAUUUCACAUUUUCACCCAAUUCCAUUCAAGUAUGGGAAAAGUUCCAAUUUAACGCGGUGU -------------.........-----.......-..............(((((..((((((......))))))...(((.......)))).)))). ( -9.60, z-score = -0.31, R) >droVir3.scaffold_13047 13326712 71 + 19223366 ------------------------AUAUACAAGAAUUAU-UUUUUUUCUCGCUC-AUUCUAUUUAUGUAUGGGAAAAGUUCCAAUUUAACAUGGUGU ------------------------........(((((..-..(((((((((..(-((.......)))..)))))))))....))))).......... ( -9.60, z-score = -0.62, R) >droMoj3.scaffold_6540 17856969 77 + 34148556 -------------------CAUAUAUAUACAUCUAAUAUAAUAUUUUUUCGCCC-AUUCUAUUUAUGUAUGGGAAAAGUUCCAAUUUAACAUGGUGU -------------------.........(((((.............(((..(((-((.(.......).)))))..)))..............))))) ( -9.53, z-score = 0.20, R) >consensus _____________AAUAUGUUU_____AACUACA_AUAUUUCACAUUUUCACCCAAUUCCAUUCAAGUAUGGGAAAAGUUCCAAUUUAACACGGUGU .................................................((((...((((((......))))))...(((.......)))..)))). ( -8.40 = -7.81 + -0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:05 2011