| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,791,431 – 2,791,493 |
| Length | 62 |
| Max. P | 0.987843 |
| Location | 2,791,431 – 2,791,493 |
|---|---|
| Length | 62 |
| Sequences | 8 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 84.48 |
| Shannon entropy | 0.30420 |
| G+C content | 0.30231 |
| Mean single sequence MFE | -7.37 |
| Consensus MFE | -6.70 |
| Energy contribution | -6.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.29 |
| SVM RNA-class probability | 0.987843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2791431 62 + 27905053 AAAACUUUUUUCCACUUGAGUAACUUAAGUGCCAAUUCCAUCCAAAAACAAAGAAAAAAAUA .....(((((((((((((((...)))))))).....................)))))))... ( -7.59, z-score = -2.31, R) >droSim1.chr3R 2830929 54 + 27517382 AAAACUUUUUUCCACUUGAGUAACUUAAGUGCCAAUUCCAUCCAAAAAAAAAAA-------- ............((((((((...)))))))).......................-------- ( -6.70, z-score = -2.39, R) >droYak2.chr3R_random 668515 52 + 3277457 AAAACUUUUUUCCACUUGAGUAACUUAAGUGCCAAUUCCAUCGCAAGAAAAA---------- ............((((((((...)))))))).........((....))....---------- ( -9.30, z-score = -2.70, R) >droEre2.scaffold_4770 3042458 53 + 17746568 AAAACUUUUUUCCACUUGAGUAACUUAAGUGCCAAUUCCAUCCAAAAUAAAAA--------- ............((((((((...))))))))......................--------- ( -6.70, z-score = -2.71, R) >dp4.chr2 11236954 55 - 30794189 AAAACUUUUUUCCACUUGAGUAACUUAAGUGCCAAUUCGUCCCCAAAAAAAAGAA------- ....(((((((.((((((((...)))))))).......(....)..)))))))..------- ( -7.60, z-score = -2.10, R) >droWil1.scaffold_181089 12197695 54 + 12369635 AAAACUUUUUUCCACUUGAGUAACUUAAGUGCCAAUUCCCCUUAAAAAGAAGCA-------- ....((((((..((((((((...))))))))............)))))).....-------- ( -7.44, z-score = -1.58, R) >droVir3.scaffold_13047 13312248 55 - 19223366 AAAACUUUUUUCCACUUGAGUAACUUAAGUGCCAAUUCC-UCCAAAAACAAAAAAA------ ............((((((((...))))))))........-................------ ( -6.70, z-score = -2.17, R) >droGri2.scaffold_14906 2910355 59 - 14172833 AAAACUUUUUUCCACUUGAGUAACUUAAGUGCCAAUUCCUCCAAAAAAAAUAGAAGAAG--- ......((((((((((((((...)))))))).....................)))))).--- ( -6.89, z-score = -1.18, R) >consensus AAAACUUUUUUCCACUUGAGUAACUUAAGUGCCAAUUCCAUCCAAAAAAAAAAA________ ............((((((((...))))))))............................... ( -6.70 = -6.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:04 2011