| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,788,718 – 2,788,781 |
| Length | 63 |
| Max. P | 0.923011 |
| Location | 2,788,718 – 2,788,781 |
|---|---|
| Length | 63 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 78.31 |
| Shannon entropy | 0.35384 |
| G+C content | 0.37852 |
| Mean single sequence MFE | -15.37 |
| Consensus MFE | -7.17 |
| Energy contribution | -7.74 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2788718 63 + 27905053 CCAAAUGCGAUGCCCCCAUUCAUAUAUAUAAAGUUCGAGUGGGAGAUGCAGAGUAUAACAAUU ....((((..(((((((((((...............))))))).)..)))..))))....... ( -15.16, z-score = -2.80, R) >droYak2.chr3R_random 665818 62 + 3277457 CCAAGUACGAUUCCUCCAUUCAUCUUAAAUAAGAGCGAGUGGGAAAU-CGGAGUAUUACAAUU ....(((..((((((((((((.((((....))))..)))))))....-.)))))..))).... ( -16.40, z-score = -3.05, R) >droSec1.super_6 2879813 63 + 4358794 UCAAAUGCGAUAGUACCAUUUAUAUUUAUAAAGUGCGAGUGGGAGAAGCAGAGUAUGCCAAUU .....(((.......(((((..((((.....))))..))))).....)))............. ( -10.00, z-score = -0.61, R) >droSim1.chr3R 2828305 63 + 27517382 UCAAAUGCUAUAGCCCCAUUCAUAUUUAUUAAGUGCGAGUGGGAGAAGUAGAGUUUGACAAUU ((((((.((((..((((((((.((((.....)))).))))))).)..)))).))))))..... ( -19.90, z-score = -4.67, R) >consensus CCAAAUGCGAUACCCCCAUUCAUAUUUAUAAAGUGCGAGUGGGAGAAGCAGAGUAUGACAAUU ....((((......(((((((.((((.....)))).))))))).........))))....... ( -7.17 = -7.74 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:04 2011