| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,787,507 – 2,787,606 |
| Length | 99 |
| Max. P | 0.946889 |
| Location | 2,787,507 – 2,787,606 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 69.23 |
| Shannon entropy | 0.55651 |
| G+C content | 0.57464 |
| Mean single sequence MFE | -22.15 |
| Consensus MFE | -10.54 |
| Energy contribution | -11.32 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2787507 99 + 27905053 --CCCGACUCCCGCUUCCCACA--GCAACCAUCCCACUUCCCGCUUCCC-------AGUGCCCGCCCCUCGGGCAG---UUUAGUAUAUAACAAGUCAGCGUCAGCUGCUCCU --...((((...(((......)--))................(((....-------(.((((((.....)))))).---)..)))........))))(((....)))...... ( -20.00, z-score = -2.04, R) >droSim1.chr3R 2827009 99 + 27517382 --CCCGACUCCCGCUUCCCACA--GCAACCAUCCCACUUCCCGCUUCCC-------AGUGCCCGCCCCUCGGGCAG---UUUAGUAUAUAACAAGUCAGCGUCAGCUGCUCCU --...((((...(((......)--))................(((....-------(.((((((.....)))))).---)..)))........))))(((....)))...... ( -20.00, z-score = -2.04, R) >droSec1.super_6 2878513 101 + 4358794 UACCCGACUCCCGCUUCCCACA--GCAACCAUCCCACUUCCCGCUUCCC-------AGUGCCCGCCCCUCGGGCAG---UUUAGUAUAUAACAAGUCAGCGUCAGCUGCUCCU .....((((...(((......)--))................(((....-------(.((((((.....)))))).---)..)))........))))(((....)))...... ( -20.00, z-score = -1.86, R) >droYak2.chr3R_random 664503 108 + 3277457 --CCCGCUACCCGCUUCCCACACAGCCCCCAUCCCACCUUCCACUUCCCGCUUCAUAGUGCCCGCCCCUCGGGCAG---UUUAGUAUAUAACAAGUCAGCGUCAGCUGCUCCU --...((((..((((........)))................................((((((.....)))))))---..))))........((.((((....))))))... ( -19.90, z-score = -1.94, R) >droWil1.scaffold_181089 174767 85 - 12369635 --------------------CCCAGCAGCAGCACUCGCUUCUGGUUC-A-------UCCUUCCGCCUGUCUUGCAGCAGUUUAGUAUAUAACAAGUCAGCGUCAGCUGCUCCU --------------------...((.((((((...((((.((.(((.-.-------.........((((......))))..........))).))..))))...)))))).)) ( -19.10, z-score = -0.65, R) >droMoj3.scaffold_6540 17835436 96 - 34148556 ----------CUCAGUCAGAGUCGGAGUCGGAGUCAGAGUCAGACUCUG-------AGUCUCAGAGUCUCAGGCAGCAGUUUAGUAUAUAACAAGUCAGCGUCAGCUGCUGCU ----------.......(((.(((((.((((((((.......)))))))-------).)))..)).)))..((((((((((..((.............))...)))))))))) ( -33.92, z-score = -2.44, R) >consensus __CCCGACUCCCGCUUCCCACA__GCAACCAUCCCACUUCCCGCUUCCC_______AGUGCCCGCCCCUCGGGCAG___UUUAGUAUAUAACAAGUCAGCGUCAGCUGCUCCU ..........................................................((((((.....))))))..................((.((((....))))))... (-10.54 = -11.32 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:03 2011