| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,785,784 – 2,785,851 |
| Length | 67 |
| Max. P | 0.598004 |
| Location | 2,785,784 – 2,785,851 |
|---|---|
| Length | 67 |
| Sequences | 7 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 74.79 |
| Shannon entropy | 0.47677 |
| G+C content | 0.38609 |
| Mean single sequence MFE | -8.27 |
| Consensus MFE | -5.82 |
| Energy contribution | -6.13 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2785784 67 + 27905053 --------AGCUUUCCAUUUCCCCUCCAGUCAAGGCUUGUAAUUAAAUUAAAAUUCCUUCAACAUGACAAGCCAG --------.........................(((((((..........................))))))).. ( -8.97, z-score = -2.01, R) >droSim1.chr3R 2825432 66 + 27517382 --------AGCACUU-AUUUCCCCUGCAGUCAAGGCUUGUAAUUAAAUUAAAAUUCCUUCAACAUGACAAGCCAG --------.(((...-........)))......(((((((..........................))))))).. ( -9.97, z-score = -1.41, R) >droSec1.super_6 2876944 66 + 4358794 --------AGCACUU-AUUUCCCCUGCAGCCAAGGCUUGUAAUUAAAUUAAAAUUCCUUCAACAUGACAAGCCAG --------.(((...-........)))......(((((((..........................))))))).. ( -9.97, z-score = -1.20, R) >droYak2.chr3R_random 662822 63 + 3277457 --------AGCACUU-AUUGCCC---CAGUCCGGGCUUGUAAUUAAAUUAAAAUUCUUUUCAUAUGACAAGCCAG --------.(((...-..)))..---.......(((((((.........(((....))).......))))))).. ( -9.89, z-score = -0.80, R) >droEre2.scaffold_4770 3036807 65 + 17746568 --------AGCACUU-AUUGCCCUC-CAGUCAAGGCUUGUAAUUAAAUUAAAAUUCCUUUCACAUGACAAGCCCG --------.(((...-..)))....-.......(((((((..........................))))))).. ( -9.17, z-score = -1.27, R) >droAna3.scaffold_13340 18423409 66 - 23697760 ---------CUCCCUCUUCGCUUCUACAGACUUGACUUCUAAUUAAAUUAAAAUUCCUUUUACAUGACAAGACCG ---------........(((..((....))..)))........................................ ( -0.30, z-score = 1.49, R) >dp4.chr2 11227738 73 - 30794189 CUCUCUCCCACACUCUGUAGAUUUUCC--UCAAGGAUUGUAAUUAAAUUAAAAUUCCUGUUACAUGACAGGCCCC .........(((.(((..((......)--)...))).)))...............((((((....)))))).... ( -9.60, z-score = -0.13, R) >consensus ________AGCACUU_AUUGCCCCU_CAGUCAAGGCUUGUAAUUAAAUUAAAAUUCCUUUAACAUGACAAGCCAG .................................(((((((..........................))))))).. ( -5.82 = -6.13 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:55:02 2011