Locus 8933

Sequence ID dm3.chr3R
Location 2,762,689 – 2,762,765
Length 76
Max. P 0.875710
window12265

overview

Window 5

Location 2,762,689 – 2,762,765
Length 76
Sequences 4
Columns 83
Reading direction forward
Mean pairwise identity 63.66
Shannon entropy 0.56943
G+C content 0.37205
Mean single sequence MFE -17.35
Consensus MFE -9.57
Energy contribution -10.57
Covariance contribution 1.00
Combinations/Pair 1.25
Mean z-score -1.21
Structure conservation index 0.55
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.02
SVM RNA-class probability 0.875710
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 2762689 76 + 27905053
UAAGUACGAGAGUGCGGCCAUUCGGACAGGAUAUAAUUUUAUUG------CAAGGAGAUCUACUGUCCACUUG-ACAGUUUCU
...((((....))))........((((((((((......)))).------...((....)).)))))).....-......... ( -16.60, z-score =  -0.63, R)
>droSim1.chr3R 2801111 75 + 27517382
UAAGUACUACAGUGCGGUCAUUAGGACAGGAUUUAAUUUUAUUU------UAAGGAUCUCCACUGUCCACUUGGACAGUGU--
...((((....))))((((.((((((.(((((...))))).)))------))).))))..((((((((....)))))))).-- ( -23.10, z-score =  -3.26, R)
>droSec1.super_6 2853871 75 + 4358794
UAAGUACUACAGUGCGGUCAUUCGGACAGGAUUUAAUUUUAUUU------UAAGGAUCUCCACUGUCCACUUGGACAGUGU--
...((((....))))((((.(((.....)))(((((.......)------))))))))..((((((((....)))))))).-- ( -20.40, z-score =  -2.26, R)
>droVir3.scaffold_13047 13276246 82 - 19223366
UAAUCUCGAAAGGCUAUCUAUAUGUACAGUGAUCGAUAUAACUAGUUAGACAAGACUAAGUAGUUUUUACUUCUAUUUUAAU-
.....((....))..............(((((.......(((((.((((......)))).))))).)))))...........- (  -9.30, z-score =   1.32, R)
>consensus
UAAGUACGACAGUGCGGCCAUUCGGACAGGAUUUAAUUUUAUUU______CAAGGAUAUCCACUGUCCACUUGGACAGUGU__
...((((....)))).............................................((((((((....))))))))... ( -9.57 = -10.57 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:58 2011